Gene SO_0853 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSO_0853 
Symbol 
ID1168700 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella oneidensis MR-1 
KingdomBacteria 
Replicon accessionNC_004347 
Strand- 
Start bp874887 
End bp875321 
Gene Length435 bp 
Protein Length144 aa 
Translation table11 
GC content47% 
IMG OID637342823 
Productpilin, putative 
Protein accessionNP_716484 
Protein GI24372442 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG4970] Tfp pilus assembly protein FimT 
TIGRFAM ID[TIGR02532] prepilin-type N-terminal cleavage/methylation domain 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCCACGGC CATCTATTGA AGGGTTCACT TTGGTTGAAT TGATGGTCGT AATTGCCATT 
ATCGGCATCT TAGCCAGCCT AGCACTGCCT TCCTATCGGG ATCTGATTGC CAAAGAAAGT 
CTCATCTCCA CAGCAAATGA ATTAATTTCC AGCTACAAAT TTGCCCGTGG CGAAGCCATC 
AAACGTAATC AGGCCGTCAC GTTAGAAGCC AAACAAGATG GACGTTGGCT GATCATCAGT 
AATCAGGAGG AACTCAAAGT ATTTAGCCCA TCGAGTCGTG GCATCAGCAT CGACGGCTTT 
AATACCCTCG ATATCAACGC CACAGGCAAT ACCACGAAGA CGCAGATAAG CCTCGAAAAT 
ACCCAAGGGG AAAAGCTCAA TTTGTGCATA TTGCCAAGCG GCCAAAGTTT TTTACAGGAG 
GAAGCATGCG CGTAA
 
Protein sequence
MPRPSIEGFT LVELMVVIAI IGILASLALP SYRDLIAKES LISTANELIS SYKFARGEAI 
KRNQAVTLEA KQDGRWLIIS NQEELKVFSP SSRGISIDGF NTLDINATGN TTKTQISLEN 
TQGEKLNLCI LPSGQSFLQE EACA