| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_0841 |
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| Symbol | |
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| ID | 1168688 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella oneidensis MR-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004347 |
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| Strand | + |
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| Start bp | 861295 |
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| End bp | 862764 |
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| Gene Length | 1470 bp |
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| Protein Length | 489 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 637342811 |
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| Product | GGDEF domain-containing protein |
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| Protein accession | NP_716472 |
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| Protein GI | 24372430 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGTATTTGA GAAGCTACAT GGGTTGGCGA TTTTGGGCTT TGTTTTTCTG TTTATGCTCA
CCCTCAAGCG TGAGTGCTGA GCGTTTGGCT TCGAGCTATC TCAAAGTCAC AGAGGAAGCT
GCTAGTAGCC GTCAGTTAAT CCGTTATTGC GTTGATCCCG ATTGGCTCCC TTACGAAGCT
ATTCGGGAGG GAGAGCATGT TGGGATCTCA TCGGACTATA TTCGTTACAT TGAGTCCCAT
TCCAACTTTA AATTCAGCCT TGTTCCCACA ACATCTTGGT CCGAAACCCT TAATTTTTTA
CAAACTGGGC GCTGTGAGTT AACCCCGATG CTAAATAAAA CGGCCACCCG AGAGCAATTT
TTGCATTTTA GCCATGTGTA TTTTCACTCG CCCAATGTGC TGGTTTCTCT TAAAGAACAG
CCTTTTTTAC AAGGGTTTGA AAATATAGGC TCACGAACGT TAGCCGTGCC TAAAGGTTAT
CGTCTCGCCG AGTATATTCA ACATTATTAT CCTAAAGTGA AAATTATCGA AGTGGGCAGT
GAACCAGCAG GGCTTGAGGC TGTGCTCGAT AAACGCGCTG ATTTATTTGT TGGGTCAATG
TTTTCGGTGA ATGCTTATAT TCAGCAGACA GGTTTTAACC ATCTTAAAAT TGCGGGATGG
GGAGGGCCGG AAGATGAACT CCGTATGGGG GTGAGTTTAG GTCATGAAGC ACTGTTACCG
ATACTTAATC AAGTGCTTGA TGACGTAGAT GAGCTTGAGC GAATTAGGAT TTATCAGAAA
TGGAACAATA TTACCGTCAT CGATGAGACT AACTACCTGC TTATCTACCA AGTGATAGTT
GGTACACTCC TTGTGGTGTT TTTACTCGCC ACACGTACGT TCTTTATCAG TCGTTATAAT
CGACGCCTAA CCGATAAAAA TGAGCAGCTT GAAGCTTTAC GTCTGCGATT AGAGCACACC
AATGCCGAGC TTGAGTTTTT ATCCACCCAT GATCCGCTTA CCAAACTTTA TAACAGACAT
TATTTTAATC GCCAGTTTGT CCATGAACAT CGTTCAGAGA TTAGCTCCGA AGGTGCTATT
TGCCTTGTAA TGCTGGATAT CGATTTTTTT AAAGAGATTA ATGACACCTT AGGCCATGCC
GTCGGCGATA ACATTTTGAT GGAACTGTCT GGGGTGTTGC AGCATTGTGT GCGCGAAACA
GATGTTGTTG CTCGTTGGGG AGGCGAGGAG TTTGTGATTC TGTGCCATCA GACTTCCATC
GACTTAGTTA AAACCTTGTG CCAGCGGATT GCTGCAGCGA TTAAGGATTA TCGTTTTAGT
GGCAATGTGC AGCTTACTTG TAGTTTTGGC ATAGCCAAAT TAGTGAACAA CGAGCCTATG
CAGTCTTGTT TTGAGCGAGC TGATAAGGCG TTGTATCAAG CTAAGGCATT GGGCAGAAAT
CAGATTTGTG TGGATGAATT TAACACTTAG
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| Protein sequence | MYLRSYMGWR FWALFFCLCS PSSVSAERLA SSYLKVTEEA ASSRQLIRYC VDPDWLPYEA
IREGEHVGIS SDYIRYIESH SNFKFSLVPT TSWSETLNFL QTGRCELTPM LNKTATREQF
LHFSHVYFHS PNVLVSLKEQ PFLQGFENIG SRTLAVPKGY RLAEYIQHYY PKVKIIEVGS
EPAGLEAVLD KRADLFVGSM FSVNAYIQQT GFNHLKIAGW GGPEDELRMG VSLGHEALLP
ILNQVLDDVD ELERIRIYQK WNNITVIDET NYLLIYQVIV GTLLVVFLLA TRTFFISRYN
RRLTDKNEQL EALRLRLEHT NAELEFLSTH DPLTKLYNRH YFNRQFVHEH RSEISSEGAI
CLVMLDIDFF KEINDTLGHA VGDNILMELS GVLQHCVRET DVVARWGGEE FVILCHQTSI
DLVKTLCQRI AAAIKDYRFS GNVQLTCSFG IAKLVNNEPM QSCFERADKA LYQAKALGRN
QICVDEFNT
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