| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_0719 |
|---|
| Symbol | |
|---|
| ID | 1168577 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella oneidensis MR-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004347 |
|---|
| Strand | - |
|---|
| Start bp | 734402 |
|---|
| End bp | 736645 |
|---|
| Gene Length | 2244 bp |
|---|
| Protein Length | 747 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 637342702 |
|---|
| Product | TonB-dependent receptor, putative |
|---|
| Protein accession | NP_716352 |
|---|
| Protein GI | 24372310 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG4771] Outer membrane receptor for ferrienterochelin and colicins |
|---|
| TIGRFAM ID | [TIGR01785] TonB-dependent heme/hemoglobin receptor family protein
[TIGR01786] TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein
[TIGR03304] outer membrane insertion C-terminal signal |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAACCGT TGCCGCTAAG TCTGTGCGCC CTTGCCGTAG CAAGTGCATT GCCCGTTTGG
GCAGAAGAAC AAGCTAAACC ACTGATTAAC GAAGTTATTG TGGTCTCAGG CTCCCGTATG
GAACAAAACA TTGAGCAGGT GGCAGGATCT ATTCTGGTCA TAGATGAAGA AGCCATTGAA
CGCAATATGA GCAATGATTT TGGTAGCCTG TTCCGTAACG AATCGGCTGT CGATATCAAG
GGTGGCGCGG GCAAACCAAC CTCAGTGACG ATTCGCGGTA TCGGCGGTAA TCGGGTAATG
ATGGTGAAAG ACGGCGTACG GGTAAATAAC CAGTATGCTT CGCCATTAGG CCCAGGTGCT
GAAGGCACAG GCCGTGGTTT AACCGAAGTG CAAAGTCTTA AGCAAATTGA AGTAGTTAAA
GCCGCTGCAT CCACTATGTA CGGCTCCGAT GCCCTCGGTG GCGTGGTAGT GATGCGCACA
AAAGATGCCA GCGACTACCT GCGGGGCGAA GATTATTATG TGTCGCTCAA TGCGGGCTAT
TCGGGCATCA ATAACGAGTA CTCCGGCGGT TTTACCAGCG CAGCGGCCTA TAGCGATTTT
GAGAATTTGC TAACCTACCA GCACCGCAAG GGCGAAGAGT TACCGAACTA CTTTGATACT
CAGCCTGAAA GCGATCTGTT ACAAGACAGC CTGCTATTCA AGAGCAAATA CCGTTTTAAT
GAGCACACCA CAGTGCAGCT CACCCTCGAC TACCTAGAGC AAACACTTGA ACGCTGGGAA
GATAAGCTCA ATCGTGCCCA AGTGCCACAG GAGCGGATTG ATACCGATCG CGATACCCAA
GTGATCAACG GTGCCCTGCA ATTGCGCTCC GATAAAGCCA CTTACTTACA CGATGATTTG
ACCGTTACCG CCTATTTTGG CCAAACAGAG CAACTCGAAC ACCGTGATTA TTTTGATTTG
CGTACCGCAG CGCGCCCACT TACCGAATAT CGCGACTATG AATTTAAAGA TCAGCGACTG
GGTTTAACCA GCACCTTCAG CAAATACATA GGCGCTGAGG GATACGGCCA TCAGCTCACC
TACGGTATGG ACTATGAATG GTCCCAAATG ATGCGCCATC GCAACAATAA TATCGCCAGT
AACGGCGGTG ATTGGCAAAC CGAAACGCCC TTTACCTTTG CCGATACCGA TAGCAACCGT
TTAGGGCTAT TTTTGCAGGA CGATATCACC CTGTTAAATG GTGATTTAAA CCTGATTGGC
GGTTTACGTT ATGACTATTT CCGTAACAGC CCCGACCAAC AGCAAGCGAT GGAAGCAGGT
AAAGATCCCG CCGACTTTGC GGTAATGAGC GACACCTTTT GGTCACCCAA AGTGGGGCTC
GTTTATAAAC TTACCGACAC AGTGAGTGCC TATGCTCAAT ATGCCTATGG CTATAAAATG
CCTACGCCCG ATCAAAAATG GGGTGAGTTA GAGGTCGATG GTGGCTCGAT GACCGATGTG
ATCATTCAAG CCAACTATGA CTTAAAGTCT GAGCAATCCC ATACGTGGGA ACTGGGTATC
CGTGGCAATC ATGCAGATAC TCAATATGAA CTCACCACCT TCGACACCCA CGCGGTCGAC
TTTAGTGATT GGCAATATGT CAGCTTTAAA CCGCCAGTGT TTGGTCCGGT GATGCAGCCC
ATGGAGTTCA AATACCAGTA CTTCAACCGC GATCAAGTGA CCCTCTATGG CGCAGAGGCC
CAAGCCAACC ATTGGCTGAC AGATTCTATC GAGCTATGGG GCAATATCTC CTATACCCAT
GGAACCGATG AAAACGGCCA AAACCTTAAC AGCGTTAGTC CGCTAAAAGG TAACCTAGGG
GTGAATTGGT ATAGCGATAT TGGTGGAATG GAAACCGATA TTGGCGCAGT GGTACGCTGG
GCCGATAAGA TGGACCGCAC CAACGATATC AACCTGACCA TTGATGATAT TTGCGTGATG
GGCCAATGTA TTCCTAAAGA AAGCTTTAAC GAAGTTTACA ACACCGCGGG TTACGCCGTG
CTTGACTTAA CCATGGGCCT GCACGTTACC GACAATCTGC ATCTGCGTGC TGGGGTGTAT
AACCTGTTTG ATAAGGAATA TGTTGACTAC GCCGATGTAG CTGGCCAATC CGTGTTCTTA
CTCAATAGCA CCATGAACTT GCAAAAGGAT GATTTCACCC AACCTGGGCG TTATTTCAAC
CTGAGTATGA ATTATCAGTT TTAA
|
|---|
| Protein sequence | MKPLPLSLCA LAVASALPVW AEEQAKPLIN EVIVVSGSRM EQNIEQVAGS ILVIDEEAIE
RNMSNDFGSL FRNESAVDIK GGAGKPTSVT IRGIGGNRVM MVKDGVRVNN QYASPLGPGA
EGTGRGLTEV QSLKQIEVVK AAASTMYGSD ALGGVVVMRT KDASDYLRGE DYYVSLNAGY
SGINNEYSGG FTSAAAYSDF ENLLTYQHRK GEELPNYFDT QPESDLLQDS LLFKSKYRFN
EHTTVQLTLD YLEQTLERWE DKLNRAQVPQ ERIDTDRDTQ VINGALQLRS DKATYLHDDL
TVTAYFGQTE QLEHRDYFDL RTAARPLTEY RDYEFKDQRL GLTSTFSKYI GAEGYGHQLT
YGMDYEWSQM MRHRNNNIAS NGGDWQTETP FTFADTDSNR LGLFLQDDIT LLNGDLNLIG
GLRYDYFRNS PDQQQAMEAG KDPADFAVMS DTFWSPKVGL VYKLTDTVSA YAQYAYGYKM
PTPDQKWGEL EVDGGSMTDV IIQANYDLKS EQSHTWELGI RGNHADTQYE LTTFDTHAVD
FSDWQYVSFK PPVFGPVMQP MEFKYQYFNR DQVTLYGAEA QANHWLTDSI ELWGNISYTH
GTDENGQNLN SVSPLKGNLG VNWYSDIGGM ETDIGAVVRW ADKMDRTNDI NLTIDDICVM
GQCIPKESFN EVYNTAGYAV LDLTMGLHVT DNLHLRAGVY NLFDKEYVDY ADVAGQSVFL
LNSTMNLQKD DFTQPGRYFN LSMNYQF
|
|---|
| |