| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_0628 |
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| Symbol | |
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| ID | 1168493 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella oneidensis MR-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004347 |
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| Strand | + |
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| Start bp | 653468 |
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| End bp | 655654 |
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| Gene Length | 2187 bp |
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| Protein Length | 728 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 637342618 |
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| Product | GGDEF domain-containing protein |
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| Protein accession | NP_716261 |
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| Protein GI | 24372219 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2200] FOG: EAL domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCAGATG GTTTAGCAAA TCCACTCCAA CAGGCATTAG TGACGATTTT TAGCGAAACG
CCGCTAGAAA CCCTAGAGCA AAATGTTGAT AGAGCCTTAG AGGCGATTAC GCTCCAATTG
CACTGTGATG GGGTGTTTGT TCTCACCGGG AGCTTGTCCC TCGACCATTT ACGCACCCGT
AATCTTTACT TAAAACCGCA ATTTACCCAA GGCCAGCAGA TCCGTGTGTG GCCACTTGCG
CGTATGTCTT TTTTTCGCTC CCTTGTGAGA AATCCAAAGC TGCTGAATTT ACCTGATGTG
AATACGTTAC CGCCAGAAGC TCAGGCGGAA CGGGCGCTGC TCCGGGACTG GGATGTTAAA
AGTTTACTCG TGTTACCTCC AGTGGTGTTT GGGGAAACCC GTATTGCCCT TGGTGCGGTT
AATTGCTCTG AATGTTGTGA GTGGAGCGAG GCGTTTATTC AGGAGTTTCA ACATGCGGCG
GTGATGATAG GTTCGGCGAT GGAGCTGACG CGCATCGCCC ACGATATGTT AGCGAGTGAA
AACAAATACC GCGAAGTCTT TAACCAATTG CCCTTGGCCT GCGCCTTGCT TGATAAACAA
AATCAGCTGA TGATGCTGAA CAAGATCGCG TTGCAAACTT TGCCTGTACA ACATGGATAC
GATTTATTTA GCATGGTGCG CGAAGAGGAA CATGCCATGC TCACCGATAC GCTGCATATG
GTGCGTGAAG GTGTATTGGG GCAAGCTTGG TGCGAATTGC CGCTAAAATC ACAGCATCAC
TTGGATTGGT TAAGGCTCAG TTTTAGCCAG ATCTACGGCG ATAAAGATAC GCTAGTGATG
ATTGCTGAAG ATGTGAGTGA AAAATATCGA CTCGCCGATG AGCTCTCTTT TCATGCCAAT
TATGATGCCC TGACCGGATT ACCTAATCGG CTGCACTTTG AAGCCTTACT CGAAAATCTG
CTGCATGCTA AGGATGATAT GCCCACCTGT GTTGCCTTTA TCGATGTCGA TCAGTTTCAG
GTGATCAATA ACATCAGCGG GCATCAAGCC GGAGATAAGC TATTGTGCCA ATTGGCATTA
CGGCTTAAAC AACTGGTGCG TAAGGGCGAT ATCGTTGCTC GTCTCGGTGG CGATGAGTTT
GGTATTTTAA TGCATTACTG CAATGTGGAT TCGGCGCAGC ATATCGCTAA GCGGATTTGT
ACTCAGTTAG CAACCCACGA ATTTATCTGG GAAAATCGCT GCCATAACGT CAGTGTGAGC
ATGGGGATTG CTAAGTTCAA TCGGTCGGCC TCCGACATTT ATGCCGTGAT GAGTCATGCC
GATGCGGCTT GCCGTCTCGC CAAGGACAAG GGGCGTAATG GTTGGCATTT ATACAGTACT
AAAGATCCTA AAATGACCCG TCTCTATACT GAAATGATGG CCTCGGTGGA TATTGTTAGT
GCCCTCGCGC TAAATCAATT TGAGCTGTAT TTTCAAAGTA TTGCACCGTT AAATTATGAT
GAGTCCGGAT TGCATTTAGA AGTGCTACTT CGCATGGTGC AGCCTAATGG CAACATTGTT
TCGCCAGCCA TCTTTTTGCC CGCCGCTGAA CGTTATAATT TGGCCGCGAA GATCGATTTA
TGGGTTATTG ATAATCTGCT TAAATGGGGC AGTAATCATT TAGCGATATG GCAGCAATTA
GGGCTGGTAT CCGTCAACCT TTCAGCGACA TCTTTGGGCG ATAGTGAGTT TATGAATTGG
CTCGAAATGC GGTTAATGAC TGAACCTGAG CTGGTAGATA AGCTCTGCAT CGAGATCACC
GAAACCGCCG CCGTTAGCCA ATTAGATCAA GCGACTAAAT TGATTGAGGT GCTTAGACCA
TTAAATTGCC AGCTCGCGCT GGATGATTTT GGGGCGGGAT TTTCAAGCTT TGCTTACCTG
AAACGTCTGA ATGTGGATTA TGTCAAAATC GATGGCCAGT TTGTCATTAA TCTGTGTGAG
GATGGCGCGG ATCAAGCGAT CGTCAAAGCC ATTTGTCAGT TAGGGCAAGA TATGGGGTTT
GATGTTGTGG CCGAGTTTGT TGAATCGACA GAAATCGGTT TGAAGTTAAA GAGTTTAGGT
GTCGATTATG CCCAAGGCTA TGCGATTAAC AAACCAACAC CCTTGCTTAC ATTAACCTCA
GGGTTGGCCG AGTCTTGGCT GCTGTAA
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| Protein sequence | MSDGLANPLQ QALVTIFSET PLETLEQNVD RALEAITLQL HCDGVFVLTG SLSLDHLRTR
NLYLKPQFTQ GQQIRVWPLA RMSFFRSLVR NPKLLNLPDV NTLPPEAQAE RALLRDWDVK
SLLVLPPVVF GETRIALGAV NCSECCEWSE AFIQEFQHAA VMIGSAMELT RIAHDMLASE
NKYREVFNQL PLACALLDKQ NQLMMLNKIA LQTLPVQHGY DLFSMVREEE HAMLTDTLHM
VREGVLGQAW CELPLKSQHH LDWLRLSFSQ IYGDKDTLVM IAEDVSEKYR LADELSFHAN
YDALTGLPNR LHFEALLENL LHAKDDMPTC VAFIDVDQFQ VINNISGHQA GDKLLCQLAL
RLKQLVRKGD IVARLGGDEF GILMHYCNVD SAQHIAKRIC TQLATHEFIW ENRCHNVSVS
MGIAKFNRSA SDIYAVMSHA DAACRLAKDK GRNGWHLYST KDPKMTRLYT EMMASVDIVS
ALALNQFELY FQSIAPLNYD ESGLHLEVLL RMVQPNGNIV SPAIFLPAAE RYNLAAKIDL
WVIDNLLKWG SNHLAIWQQL GLVSVNLSAT SLGDSEFMNW LEMRLMTEPE LVDKLCIEIT
ETAAVSQLDQ ATKLIEVLRP LNCQLALDDF GAGFSSFAYL KRLNVDYVKI DGQFVINLCE
DGADQAIVKA ICQLGQDMGF DVVAEFVEST EIGLKLKSLG VDYAQGYAIN KPTPLLTLTS
GLAESWLL
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