Gene SO_0627 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSO_0627 
Symbol 
ID1168492 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella oneidensis MR-1 
KingdomBacteria 
Replicon accessionNC_004347 
Strand- 
Start bp652739 
End bp653296 
Gene Length558 bp 
Protein Length185 aa 
Translation table11 
GC content46% 
IMG OID637342617 
Productputative 2'-5' RNA ligase 
Protein accessionNP_716260 
Protein GI24372218 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG1514] 2'-5' RNA ligase 
TIGRFAM ID[TIGR02258] 2'-5' RNA ligase 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGTTACAAC GACTATTTCT TGGATTTGCC CCCAATGACA CTCAGCGCCA GCAACTTTTG 
CAGTTGCAGC AATGCGTGAC ACCGCAGTTA ACGCTCCATG CTAAACCCGT GAGCAAGGCT 
AATTTTCATC TCACCCTCGC GTTTTTAGGC TTAGCCAATC AGGCTCAAAA GACACAACTG 
CTCGAAGCCG TTGATAAACT GCATCGGCCA CGATTTACAG TACAACTGGA TAAGCTCGCC 
GTTTGGCCCA AGGCGCAGGT ATGCTGTTTA AAGGGAGATA TGGTTAGCCC GGCTTTGGCG 
TTACTGGCAT CGCAGGCGCA AAATTTAGCG CAGCAGTTGC AATTGCATCA GAGCGAACAT 
CCGTTTCGAC CACATATCAG CTTGTTTAGA AAAACCAAGT ATTTCAACGC TTTTGATAAT 
GAACTTGCCC TTAAGGATCT AGCGAAGACA CCGATAACTG AGCTAACAAT CACTCCAGAT 
CAGATCCATT TGTATCTTTC TTCAAGCAGT GATAGCGGTG TGGAATATCA CATCTTACAT 
TCTTGGCCAC TCGAATAG
 
Protein sequence
MLQRLFLGFA PNDTQRQQLL QLQQCVTPQL TLHAKPVSKA NFHLTLAFLG LANQAQKTQL 
LEAVDKLHRP RFTVQLDKLA VWPKAQVCCL KGDMVSPALA LLASQAQNLA QQLQLHQSEH 
PFRPHISLFR KTKYFNAFDN ELALKDLAKT PITELTITPD QIHLYLSSSS DSGVEYHILH 
SWPLE