Gene SO_0617 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSO_0617 
SymbolargD 
ID1168483 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella oneidensis MR-1 
KingdomBacteria 
Replicon accessionNC_004347 
Strand
Start bp643453 
End bp644670 
Gene Length1218 bp 
Protein Length405 aa 
Translation table11 
GC content49% 
IMG OID637342608 
Productbifunctional N-succinyldiaminopimelate-aminotransferase/ acetylornithine transaminase protein 
Protein accessionNP_716250 
Protein GI24372208 
COG category[E] Amino acid transport and metabolism 
COG ID[COG4992] Ornithine/acetylornithine aminotransferase 
TIGRFAM ID[TIGR00707] acetylornithine and succinylornithine aminotransferases
[TIGR03246] succinylornithine transaminase family 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGCGTTG ATATGAAGTT GAATCGTGCC CAATTTGATG CGGTGATGGT GCCTAACTAT 
GCGCCAGCAG CAGTGATTCC AGTACGTGGC GAAGGTAGCC GAGTATGGGA TCAAGAGGGT
AATGAGTTTA TCGATTTTGC TGGCGGTATT GCGGTAAATT GCTTAGGTCA CTGTCATCCT
GCCTTAGTGA ATGCCTTAAA AACTCAAGGC GAAAAATTAT GGCACCTCTC TAACGTGATG
ACCAACGAGC CAGCACTCGA ACTGGCCACT AAGCTAGTGA ATAGCACGTT TGCTGAGCGT
GTCTATTTTG CCAACTCTGG CGCTGAAGCC AACGAAGCTG CCCTCAAATT AGCCCGTCGG
TATGCCTTAG AAAAGCATGG CGTTGAGAAA GACGAAATCA TCGCTTTCGA TAAAGCCTTC
CACGGTCGTA CATTTTTTAC CGTGAGTGTT GGCGGTCAAG CTGCCTATTC AGATGGTTTT
GGTCCAAAAC CACAAAGCAT TACTCACTTA CCGTTTAACG ATGTCGCGGC ACTAGAAGCC
GCCGTATCAG ATAAAACCTG TGCAATTATG CTGGAGCCGC TACAAGGCGA GGGCGGTATT
ATCGATGCAG ATCCTGCGTT CCTCAAAGCC GTGCGTGAAC TGGCTAACAA GCACAATGCG
CTGGTGATTT TCGATGAGGT GCAAACTGGT GTTGGCCGTA CCGGTGAGCT CTATGCCTAC
ATGGGAACCG ACATTGTGCC GGATATTCTG ACGACAGCTA AAGCGCTTGG CGGTGGTTTC
CCCATTGCTG CTATGCTCAC TACTACAGAA ATTGCTGAGC ATTTGAAAGT GGGTACTCAC
GGTTCAACCT ATGGTGGTAA CCCGCTGGCC TGCGCAATAG GTAATGCGGT ATTAGACGTA
GTCAACACCC CAGAAGTCTT GAATGGTGTT AAGCATCGCG AGCAATTATT ACGTGATGGT
TTGAACAAGA TTAATGAAAA ATATCATGTT TTCTCTGAAG TTCGCGGTAA AGGCTTGCTG
TTAGGGGCTG TGCTCAATGA GCAATACCAA GGTCGTTCGC GTGACTTTTT AGTGGCTTCT
GTGGCTGAAG GTTTAATGAG CCTAATGGCG GGGGCGAATG TGGTACGTTT TGCGCCTTCA
CTGGTGATCC CTGAGGCAGA TATCGCAGAG GGCCTAGCAC GTTTTGAACG TGCTGTGGCG
AGTATCGCCG CAGCCTAA
 
Protein sequence
MSVDMKLNRA QFDAVMVPNY APAAVIPVRG EGSRVWDQEG NEFIDFAGGI AVNCLGHCHP 
ALVNALKTQG EKLWHLSNVM TNEPALELAT KLVNSTFAER VYFANSGAEA NEAALKLARR
YALEKHGVEK DEIIAFDKAF HGRTFFTVSV GGQAAYSDGF GPKPQSITHL PFNDVAALEA
AVSDKTCAIM LEPLQGEGGI IDADPAFLKA VRELANKHNA LVIFDEVQTG VGRTGELYAY
MGTDIVPDIL TTAKALGGGF PIAAMLTTTE IAEHLKVGTH GSTYGGNPLA CAIGNAVLDV
VNTPEVLNGV KHREQLLRDG LNKINEKYHV FSEVRGKGLL LGAVLNEQYQ GRSRDFLVAS
VAEGLMSLMA GANVVRFAPS LVIPEADIAE GLARFERAVA SIAAA