| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_0577 |
|---|
| Symbol | |
|---|
| ID | 1168445 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella oneidensis MR-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004347 |
|---|
| Strand | + |
|---|
| Start bp | 599381 |
|---|
| End bp | 602947 |
|---|
| Gene Length | 3567 bp |
|---|
| Protein Length | 1188 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 637342568 |
|---|
| Product | sensory box histidine kinase/response regulator |
|---|
| Protein accession | NP_716212 |
|---|
| Protein GI | 24372170 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0642] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAGCAGC GCGAAGAGCA GGTCGAGCGC CACGTATTGC AGATCGACTT ATTACTGGAG
TCGAGCATCC GCGCAGTGAA GAGTTTGCGG GACGTCGCTG TGGATCACCT GCGTTTAGGT
GAGCTAGTGC GTAAGGAGCG TTTACCGCAG TACGGCAAAT TTAACGAAAG TGGTCAGTAC
TTTACCTTAG AGCCTAACTA CGCCAAGGGT GGCAAGCCGT TCACTAATAT GGGGCGGATC
ACGGGTGCGG GTTCCCTCGA TGGTCGCAGC GATAAGTTTT ATCAAGAACT TGAAATGCTG
TTCGAACTAT CACTGTCCTT CCCTGTCGCC AAAGAAGCCG CACCCAAAGC CTCGGCCATT
TATTATTTGT CACGCCAGCG AATGATGTCC TATTTTCCTT GGACCAATGA CGATGAGCGC
TTTAGGGATG AATTGCTCAA CAAAAAACAA TTCCAATACG CCACGCCGGC AATGAATCCG
CAACGCAGCG TGTTTTGGAG CGAAGCCTAC GTCGACTCAA CGGGTAAGGG ATTACTGACG
ACCTTAGGGG TACCCGTTTA TCTTGACGAT GAGTTTATGG GCTCGATTAA CCTTGATATG
ACCTTGGCCT CGCTGGCGCG GCAAATTCGG GTGTATTTTA AAATGCCGGG GACGGTGATC
CTGCTCGATC AACAGAATAA TATTTTGTCC CACAGTGATT TCGATGGCTC CGATATCAAT
CGGGTTTACC ATATCAGCCA GCGCATTCCC TCAGAGCTGC ATTCTCTGCC CGAGTCTGAA
TTATTCGACG CCCACGAAGG GATTATTCGC AACGGTTACT ATATCCACTC GGTCGCACTG
CATAATGCGC CTTGGCGCTT GTTGTATCTG CAAAATGAGG ACGATCTGTT CCAAGATTCG
GTCGAAAAAC TGCAGCTGAC TTTTATCTTG GTGGTTATTG CCCTGTCGGT ACTGGTGACC
ATAGTGCACT GGCAAACGCG TCGCTCCTTC GTTAGCCCCG CCTCTCGTTT GTTATCGCAC
TTAGAAGGCT GCTCCCAAGA GCCACGTAAA CCGCCGGAAA AAATTACCCC AGGTTGGGAG
CCTTGGTTCC TACTGGTGAG CCGAATTTTT GAGGAAAACA AGCAATATAC TCATCATCTG
GCCGAGCAGA ATAAGCGACT TGATAAACTG GTGGCGCGCC GCACCGAGCG GCTAAAAGAT
GCCACCGAGC GCCGCGAGCG TGAATATGCG CTATTGCGAT CTCTGCTTGA CTCCATTCCT
GAGGCCATTG TCTTTAAAGA TAAAGAAGGG AATTACCTCG GTTGTAACAA GGCTGCTGAG
CGGATGCTGG GTTACACCGA AAGTGAAATG ATCGGTCTTT CGTCGGAGGA TTTAACCTCG
CCAGAGATGG GCATTCGTAT TCGCGCCGAA GATGCGCAGA TTTTAAAAGA TCGCACGCCG
CTACGTTATC AAGAGAAGGT CGAATTAGCG GGTAAGCCCG TGCTGCTCGA TACCCTTAAA
TTGCCTTTTT ACAACCGCCG TGGCGAGTTG CAAGGTCTGA TTGCCGTGTG GCGTGATGTG
ACACGAGAGT ACGAGTCCGC AGAGCAGTTA CGCCTTTCAG AAGAGCGTTA CCACTTAGCT
ATGGATGCGG TAGAAGACGG TCTATGGGAT TGGTATCTGG ATTCGGAGCA TATTATTTGC
AACCCGTCCT ATTATTCGAT GTTGGGTTAT AAACCCAATG AGTTTCCTGC ATTAGTGTCG
GCGATCGACC AACTCACTCA CCCTGACGAT AGAATTCGGG TCGAAGAGTA CCGTAATCAG
TATCTTGAAA ACCCAGTCGA TGCTTACGAA ATCGAGTTCC GAATCTTGGG CAAAAACAGC
AGTTATCATT GGGTGCTTTC CCGTGGCCGG GTGGTGGAGT TTACCACCGA TGGTCAGCCT
AAGCGTATGG TTGGTACCCA TAAGGATATT ACCCGCCATA AGAGTAACGA AGTGGCGCTC
TTGGAGGCGA AACAGGACGC AGAATTGGCG AACCTGTACA AGAGTGAATT CTTGGCGAAT
ATGAGCCATG AAATCCGTAC GCCGATGAAC GCCATTATCG GTATGTTGCA GTTAGCACAG
CGCACTTCAT TGACGGCGCA GCAAAAAGAT TATCTCGAGA AAGCCGGTTT TTCGGCGCAG
TCATTGCTGC GAATTATTAA CGATATTCTC GACTTCTCTA AGATTGAGGC CGGTAAATTG
GAGCTGGAAC GCGTGCCGTT CCCGCTGGAT AAGGTGCTCG ATCATGCCCT CGATCTCAAC
GCGCTCAAGG CGCAGGAGCA AGGTGTTGAA TTATTGCTGT ATGCGCCTGT AACTGCGGGA
TTAATTCTTA AGGGCGACCC GCTGCGTCTA GGACAAGTGC TGATCAATTT GTTGTCGAAT
GCAGTTAAGT TTACTCAATC CGGTGAGATT GAATTGGGCT GCGAAGATGT GGGCGAGCGA
GATCATCGGA TTACTTTAAA ATTCTGGGTG CGCGATACCG GCATCGGGAT CAGTAAAGAT
CAGCAGGAAA AGTTATTCGA TGCCTTTGCC CAAGCCGATG GCTCAACTAC CCGTAAATAC
GGCGGTACGG GATTAGGTTT ATCGATCAGT AAGCATTTGG TCTCCATGAT GGGTGGCAAG
ATGCAAGTGC AGAGTGAGTT AGGTGTGGGA AGTACCTTTA GCTTTACCAT TAGCTTCGAA
ATAGCTGAAG AAGCGAAAAT CGAGCCTTTG GTTGTGCCTG AAAAACTCAA TAACTTACGT
ACCCTGGTGG TGGATGATAA CCCGACGGCA CTGCAAATAT ATTCGGCACT AATGCGCGAC
TTCCACTTTG AGGTGGATAC CGCTGCGAGC GGTGCTGAGG CACTGTACAA GTTGTCGCGG
GATCCAATCG ATTTATTATT ACTCGATTGG ATGATGCCAG AGATGGATGG TAGTGATGTG
ATCAGTGCCA TCGATACTAT GGTGGCCGAA GGTCGGATCG CGAAACGGCC GATCATTATT
ATGATGACAG CCTATGCGGC AGAGCCTTTG CTGCATGAAG TGGATAGCGC CAACGTATTT
GCCGTATTAC AAAAACCCTT TAAGGCTTCG AGCCTGTTCG ATGAGATTAT TGCTGCCTTT
GCCGACGAAC CAAGGCTCAA TGTCGTACAG CCTATCGCTG AAGTGGCGGT AGAAGAAGGT
GAGCACACAG GCTTAGTGCT CTTGGTGGAA GATAACTTTA TTAACCAGCA AGTGGCGACT
GAACTGTTAA AGAGTGCGGG CTACGAAGTG GTCGTGGCGG GGAATGGTCA AATTGCCCTC
GATATTGTCG ACTCGCGGCC TTTCGATGCG GTATTAATGG ATATTCAGAT GCCAGTGATG
GACGGCTTAA CCGCGGCGCG TGCACTGCGT GAACGTTATA GCGCCGATGT CTTGCCGATT
ATCGCCATGA CGGCCCATGC GATGTCAGGT GATCGGGAAA AGAGTCTCGC CGCTGGGATG
AATGCTCATA TTACTAAGCC GATAGTGTTA ACAGAGCTAT TTGAAACCTT AACTCATTGG
ATTAAACACA AGCATAATCA CCGTTAA
|
|---|
| Protein sequence | MEQREEQVER HVLQIDLLLE SSIRAVKSLR DVAVDHLRLG ELVRKERLPQ YGKFNESGQY
FTLEPNYAKG GKPFTNMGRI TGAGSLDGRS DKFYQELEML FELSLSFPVA KEAAPKASAI
YYLSRQRMMS YFPWTNDDER FRDELLNKKQ FQYATPAMNP QRSVFWSEAY VDSTGKGLLT
TLGVPVYLDD EFMGSINLDM TLASLARQIR VYFKMPGTVI LLDQQNNILS HSDFDGSDIN
RVYHISQRIP SELHSLPESE LFDAHEGIIR NGYYIHSVAL HNAPWRLLYL QNEDDLFQDS
VEKLQLTFIL VVIALSVLVT IVHWQTRRSF VSPASRLLSH LEGCSQEPRK PPEKITPGWE
PWFLLVSRIF EENKQYTHHL AEQNKRLDKL VARRTERLKD ATERREREYA LLRSLLDSIP
EAIVFKDKEG NYLGCNKAAE RMLGYTESEM IGLSSEDLTS PEMGIRIRAE DAQILKDRTP
LRYQEKVELA GKPVLLDTLK LPFYNRRGEL QGLIAVWRDV TREYESAEQL RLSEERYHLA
MDAVEDGLWD WYLDSEHIIC NPSYYSMLGY KPNEFPALVS AIDQLTHPDD RIRVEEYRNQ
YLENPVDAYE IEFRILGKNS SYHWVLSRGR VVEFTTDGQP KRMVGTHKDI TRHKSNEVAL
LEAKQDAELA NLYKSEFLAN MSHEIRTPMN AIIGMLQLAQ RTSLTAQQKD YLEKAGFSAQ
SLLRIINDIL DFSKIEAGKL ELERVPFPLD KVLDHALDLN ALKAQEQGVE LLLYAPVTAG
LILKGDPLRL GQVLINLLSN AVKFTQSGEI ELGCEDVGER DHRITLKFWV RDTGIGISKD
QQEKLFDAFA QADGSTTRKY GGTGLGLSIS KHLVSMMGGK MQVQSELGVG STFSFTISFE
IAEEAKIEPL VVPEKLNNLR TLVVDDNPTA LQIYSALMRD FHFEVDTAAS GAEALYKLSR
DPIDLLLLDW MMPEMDGSDV ISAIDTMVAE GRIAKRPIII MMTAYAAEPL LHEVDSANVF
AVLQKPFKAS SLFDEIIAAF ADEPRLNVVQ PIAEVAVEEG EHTGLVLLVE DNFINQQVAT
ELLKSAGYEV VVAGNGQIAL DIVDSRPFDA VLMDIQMPVM DGLTAARALR ERYSADVLPI
IAMTAHAMSG DREKSLAAGM NAHITKPIVL TELFETLTHW IKHKHNHR
|
|---|
| |