Gene SO_0569 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSO_0569 
Symbol 
ID1168439 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella oneidensis MR-1 
KingdomBacteria 
Replicon accessionNC_004347 
Strand- 
Start bp589618 
End bp590592 
Gene Length975 bp 
Protein Length324 aa 
Translation table11 
GC content46% 
IMG OID637342562 
Productsensory box/GGDEF family protein 
Protein accessionNP_716204 
Protein GI24372162 
COG category[T] Signal transduction mechanisms 
COG ID[COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCAAACG ATCAAAGCGC AATGAACGAA CTCCATTGGC TTATCGATAT GGTACAAACC 
ATAGAAGTGG GTCTCGTGGT ATTAGATCGC GATTATAATA TCCAACTGTG GAACGGCTTT 
ATGGAAAACC ATAGCGGCGT CTCGCCCAAT TCCATTAAAG GTCAAAACCT GTTTAGCCGC 
TTCCCTGATT TGCCTGCCAC TTGGTTAAAA CAAAAAATGG AATCGGTTTT TATGCTTAAA 
AATCGAGCTT TCATTAGCTG GGAACAAAGA CCTTACGTTT TTCAGTTTAA AAACTACCGC 
CCTATCACTG GGCGCGCCGA TTTTATGTAC CAAAACGTGA CCTTGTTACC ACTGGCCTCA 
TTAACCGGTA AAATCACCCA TATCAGTGTG ATTGTTTATG ATGTCACTGA TATCGCGGTA 
AATAAGTTGC AGCTCAAGGC CGCCAACGAG CAGTTAGAAC GCCTCAGCCA GACCGATGGC 
TTAACGCAAC TGCATAATCG TCGCCATTGG CAACAATGCT TGGAGCATGA GTATGATCTC 
TATGCCCGCT ATTCTGGGAT CGCGAGCTTG GTGATGATCG ATATCGATCA TTTCAAAAAT 
ATCAATGACA CCTACGGGCA CCTCGCAGGT GATAAGGTGA TCCAGCATAT CGCTCATATC 
TTGAGCCATT CGTTACGGGA AACAGACTGC GCAGGTCGTT ATGGCGGTGA AGAGTTTGCA 
GTAGTCATGC CCAGTACCTG CGGCGCAGAT GCCTTAAACT TTACCGAACG TTTACGGGAA 
AAAATTGCAA GTTCAACCGT AGTTTACGAG GGACTAAAGA TAAAAGTGAC CGTCAGCCTT 
GGTGTATGTG AACTAGGCAA ACATATCAGC AGTAGCTCAA GCTGGATTTC CTGCTCAGAC 
AAAGCTCTGT ACGAGGCGAA ACAAAAGGGT CGAAACTGTA CCGTCCTGCA TTGCGCACCA 
ACCTCTGCAG AATAA
 
Protein sequence
MSNDQSAMNE LHWLIDMVQT IEVGLVVLDR DYNIQLWNGF MENHSGVSPN SIKGQNLFSR 
FPDLPATWLK QKMESVFMLK NRAFISWEQR PYVFQFKNYR PITGRADFMY QNVTLLPLAS 
LTGKITHISV IVYDVTDIAV NKLQLKAANE QLERLSQTDG LTQLHNRRHW QQCLEHEYDL 
YARYSGIASL VMIDIDHFKN INDTYGHLAG DKVIQHIAHI LSHSLRETDC AGRYGGEEFA 
VVMPSTCGAD ALNFTERLRE KIASSTVVYE GLKIKVTVSL GVCELGKHIS SSSSWISCSD 
KALYEAKQKG RNCTVLHCAP TSAE