| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_0545 |
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| Symbol | |
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| ID | 1168414 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella oneidensis MR-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004347 |
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| Strand | + |
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| Start bp | 567052 |
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| End bp | 568779 |
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| Gene Length | 1728 bp |
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| Protein Length | 575 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 637342538 |
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| Product | response regulator |
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| Protein accession | NP_716181 |
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| Protein GI | 24372139 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGTATATGG ATTTACTACT GATCGATGAT GATGAAGTCG ATAGAACAGC TATTATTCGG
GCGCTGCGAC AATCCAAGCT CGCCTTTAAT GTGGTTGAGG CGAATTGTGC TTTTGATGGC
TTAAATCTTG CCTTACAGCG TCATTTTGAT GGGATTTTAC TCGACTACCT ATTGCCAGAT
GCCAACGGCT TAGAGGTGCT GATCAAACTT AATTCGATGA CTCAGGAACA AACGGTTGTG
GTGATGCTGA GCCGTTATGA AGATGAAAAA CTTGCACAGC GTTGTATCGA ATTAGGCGCA
CAGGATTTTT TACTTAAGGA TGAAGTTAAC TCAAGAATTC TCAGTCGTTC AATTCGTTAC
GCTAAACAGC GAGCTTCTAT GGCGCTTGCC TTGAGGAATA GTCATGAAAA ACTGAAAGAG
CTAGCTGAAC ACGATTCTCT CACCAAATTA ATGAATCGAT ATGGTTTTGA GCTGTGCTTA
AATCGGGCAA TCGCCAGGGT AAAACGCAGT AATGATTTGT TAGCAGTGAT CTTGCTCGAT
CTGGATGATT TTAAAGCAAT TAATGATACT CTTGGTCACC AGACTGGTGA TATTTTGTTA
GTGAAGGTCG CATCGAGATT GAGCACAGTG TTGCGGGATG GGGATGTGAT TGCTCGTTTA
GGCGGGGATG AATTTGTGGT GTTAGTGACT GACAATGACT ACAAATATTT CCCCATGATA
GTGGCTAACC GTCTACTTAA AGCTTTTGAA GAAGTGTTTT GTCTTGGCGA TAACGATGTG
ATGATCGGCG CTAGCATCGG AGTGGCTTTT TATAATGAAG CGGCCTCAGA TAGCTCCGAG
TTAATGAAAT GTGCCGATAT TGCGATGTAT CGTGCTAAAA AAATGGGACG TAACCAGATC
CAGTTTTACT CCGAGGCGCT AGATAAAGAG GTGCGCTATC GCAATCATAT TGAATCTAGT
TTGAGAATAG CCTTAAGGCT GAATCAGTTT AAGGTTTATT ATCAAGTACA AGTTGATGCT
CAAACACATC AAATGGTGGG GATGGAGGCA CTGATCCGTT GGTTGCATCC AGAGGATGGC
TTGATTTCAC CAGACCAATT TCTGCCCATT GCTGAAGAAA TAGGGCTGAT GGAAGAGATT
GGTGATTGGG TCTTGTTCGA AACCTGTCGT CAGGCCCAGT ATTGGCTTAA TCAATTAGCG
CCAACTGGAC ATAGTTTCAC CATTGCGGTG AATTTATCAG CATCTCAAAT TGGTCATGTC
GACTTATATG AGAAAATTGC CCATGTTCTA AAAGTGACAG GGCTAACACC AGGCGCGCTA
GAGTTAGAAA TTACCGAAAA CTGTTTAATT GAAGAGCCCC ACGAGCATGC GAAGATCCTC
GATAAAATAG CCCAACTTGG AGTGCGATTC GCCTTGGATG ATTTTGGTAC GGGATTTTCA
TCTCTTGAAC ACATTAAATT GTTTCCTATC AGTGTGCTAA AAATCGATAA AAGCTTTATC
GCTTCCTACG ATAAGGATGA AAAGGACACT CGTTTGCTCA GTGCACTGCT GAACTTTGCC
TATGGTTTTA ACGTTACCTC CGTTGCCGAA GGGATTGAAA CTCTTGAACA AGCAGAGTTT
TGCACGGTAA GACATTGTAA TCTATTGCAG GGCTACCTCT TTTCTCGCCC CTTAGAGGCA
AGTGAGTTTG AGGCAAAATA CATCACGCCG TTACTTTCTA AATTGTGA
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| Protein sequence | MYMDLLLIDD DEVDRTAIIR ALRQSKLAFN VVEANCAFDG LNLALQRHFD GILLDYLLPD
ANGLEVLIKL NSMTQEQTVV VMLSRYEDEK LAQRCIELGA QDFLLKDEVN SRILSRSIRY
AKQRASMALA LRNSHEKLKE LAEHDSLTKL MNRYGFELCL NRAIARVKRS NDLLAVILLD
LDDFKAINDT LGHQTGDILL VKVASRLSTV LRDGDVIARL GGDEFVVLVT DNDYKYFPMI
VANRLLKAFE EVFCLGDNDV MIGASIGVAF YNEAASDSSE LMKCADIAMY RAKKMGRNQI
QFYSEALDKE VRYRNHIESS LRIALRLNQF KVYYQVQVDA QTHQMVGMEA LIRWLHPEDG
LISPDQFLPI AEEIGLMEEI GDWVLFETCR QAQYWLNQLA PTGHSFTIAV NLSASQIGHV
DLYEKIAHVL KVTGLTPGAL ELEITENCLI EEPHEHAKIL DKIAQLGVRF ALDDFGTGFS
SLEHIKLFPI SVLKIDKSFI ASYDKDEKDT RLLSALLNFA YGFNVTSVAE GIETLEQAEF
CTVRHCNLLQ GYLFSRPLEA SEFEAKYITP LLSKL
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