| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_0519 |
|---|
| Symbol | |
|---|
| ID | 1168389 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella oneidensis MR-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004347 |
|---|
| Strand | + |
|---|
| Start bp | 540393 |
|---|
| End bp | 541694 |
|---|
| Gene Length | 1302 bp |
|---|
| Protein Length | 433 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 637342513 |
|---|
| Product | cation efflux protein, putative |
|---|
| Protein accession | NP_716155 |
|---|
| Protein GI | 24372113 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1566] Multidrug resistance efflux pump |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATTCAA CTACTCAGAA ATCTTTTTTC CATTCTTTAG GCAATGTGTC TGCCACGGGC
TTCACATCAG TGTTTACGCC TTCCCGTTTA GCGCTGGCGC TGATGCTCAC CTCGTTAATC
TTGATTGTGC CCACGCCTAC GTTTGCTGGA GAAGGCCATG ATCATGCTGC TGAAAAGCAG
GTTAACAACA CCGCTAAGAA TACTGCTGTC GAGCAAGCAC AGGATGATCA TAGCGAGCAA
GCATTAACCT TTACGCCTGC GCAGTTGGAG CTGGCGGGAA TTCGCCTGTT ACCCTTGAGC
AGTGACAGCT TAAGTCTGAC CAATTTAAAC CTCGATGTTC GAGCGACGGC CACGTTAGTG
GTTGACCGTG ATAAAACGGC AACTTTAGCG CCACAGCTAG ATGTGCGTGT TCAGGCGCGG
CATGTGGTTC CTGGTCAAGA GGTGAAAAAA GGTGAACCCT TGCTCACCTT AGGCGGTGCA
GAAGTGGCTA AGGCGCAGGC GGAATATATC AATGCGGCCG CAGAATGGAG CCGCGTGCGC
CGTATGAGTG AAGGTGCAGT GAGCGTCAGC CGCAGAATGC AGGCTCAAGT CGATGCTGAG
TTGAAGCGGG CAATTTTAGA GGCGATCAAA ATGACCTCGG AGCAAATTCG TACCTTAGAG
AGTAAGCCTG AAGCTATTGG CAGTTATCAA TTGCTGGCGC CTATCGATGG TCGTGTGCAA
CAGGATATCG CCATGCTAGG GCAAGTGTTT AGCGCAGGCA CGCCATTAAT GCAATTGACC
GATGAGTCGC ACCTTTGGGT GGAAGCTCAG CTAACGCCAG CTCAGGCGGT CAATGTGAAG
GTAGGCGCCC CAGCCTTGAT CCAAGTGGGA GATAACACCT TAGCAGGCAA GATTATCGGC
CGCTCCCACG AGTTGGATAG CGTAACACGC ACTGAGCAAG TGTTAGTCAG CATGCCAAAC
CCTGATCATA TCTTGCATGC GGGGCAATTT GCTGAGTTGT ACTTTGCTGA TGCCTCTCAA
AACATCGCCG TGGCAAGTGG ATCAGGCGCC TCATCGGGAA TTGTACTGCC CGATGCGGCA
TTAACCCGCA GCGGTGATGG TGATTGGCAG ATCTTTATTC AAGATGAAGA TGGTTTTGAA
GCCATTGAGG TGGAGCTGGT GCAGCGTCAA CGCGGCTTGA GTTTAGTGCG CGGCAGTGAG
CTGGATAAAG CGCGGCAGGC ACAGTTAAAA GTGGTGGTAG AAGGCGCGTT CTTCTTGGCG
TCAGAGCAGG CTAAGGCAGG TTTTGATATT CATGCCCACT AA
|
|---|
| Protein sequence | MNSTTQKSFF HSLGNVSATG FTSVFTPSRL ALALMLTSLI LIVPTPTFAG EGHDHAAEKQ
VNNTAKNTAV EQAQDDHSEQ ALTFTPAQLE LAGIRLLPLS SDSLSLTNLN LDVRATATLV
VDRDKTATLA PQLDVRVQAR HVVPGQEVKK GEPLLTLGGA EVAKAQAEYI NAAAEWSRVR
RMSEGAVSVS RRMQAQVDAE LKRAILEAIK MTSEQIRTLE SKPEAIGSYQ LLAPIDGRVQ
QDIAMLGQVF SAGTPLMQLT DESHLWVEAQ LTPAQAVNVK VGAPALIQVG DNTLAGKIIG
RSHELDSVTR TEQVLVSMPN PDHILHAGQF AELYFADASQ NIAVASGSGA SSGIVLPDAA
LTRSGDGDWQ IFIQDEDGFE AIEVELVQRQ RGLSLVRGSE LDKARQAQLK VVVEGAFFLA
SEQAKAGFDI HAH
|
|---|
| |