| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_0478 |
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| Symbol | ccmF-2 |
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| ID | 1168350 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella oneidensis MR-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004347 |
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| Strand | - |
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| Start bp | 500071 |
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| End bp | 502128 |
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| Gene Length | 2058 bp |
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| Protein Length | 685 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 637342474 |
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| Product | cytochrome c-type biogenesis protein CcmF |
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| Protein accession | NP_716114 |
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| Protein GI | 24372072 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG1138] Cytochrome c biogenesis factor |
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| TIGRFAM ID | [TIGR00353] c-type cytochrome biogenesis protein CcmF
[TIGR03145] cytochrome c nitrate reductase biogenesis protein NrfE |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATTCCAG AAATCGGGCA CATATTGCTG ATCATGAGTA CTGTGTTTGC ATTATTGTCG
GCGGCCAGTC ATTTAATCGG TAGTTACCAG CGCAACCTTT ATTTAATTGC ATTTGGCAAT
AGATTATTTT ACGCGTTATT TTTCACCTTA TTAACCGCGT TATGTAGCTT AGTTTTTAGC
TTTATTGCCG ATGACTTTTC AGTCGCCTAT GTTGCCAATC ATTCCAACAG CCAACTCGCC
CTCGGTTATA AAGTCGCTGC GGTGTGGGGC AGCCATGAAG GCTCAATGCT GTTTTGGGTA
TTTGCCATTG CCCTATGGGG TGCAGTGATC AATTGGCGCC AAGCAACCCA TAGCGCCAAA
CTCGATCTGG AAAACTTACA AGCAGATAAG GCTTACTTTG GTCGGGTACT CGCTATTTTG
GCCTTAGTGA TCCTCGGTTT TAATTTGTTT TTACTCTTTA CTTCCAATCC CTTTGCTCGC
TTGCTACCGA ACATTCCAGT CGAAGGGCGC GACCTTAACC CCATATTGCA GGACATTGGC
TTAATACTGC ATCCACCTAT GCTGTTTTTG GGTTATGTCG GGCTAACGGT TTGCTTTGCC
GCAGCGCTGG CATCACTGAT TGGGGGCAAG TTACCTGCTC GCCACCTCGA TTATTTACGT
CCTTGGGTGC TACTGGCGTG GATTTTCCTC ACAGGTGGTA ATGCCTTTGG CTCTTGGTGG
GCCTACAACG AACTGGGTTG GGGTGGTTGG TGGTTTTGGG ACCCCGTTGA AAACGCCTCT
TTTATTCCTT GGTTGGTTGC AACAGCGCTG GTGCATTCCT TAGTACTCAC CCGAAAAACC
CAGGGATTTA CCCTCACCAC CCTGTTTTTA TGTTTATTGG CCTTCTCCCT CAGTCTGTTA
GGCAGCTTTT TAGTGCGTTC AGGCATAGTG CAATCGGTGC ATGCCTTTGC CGCAGATCCA
ACCCGCGGTA TGTCTATTCT CAGTTTGCTG GTGATTTTTG TTGGCGCTGC ATTATTAATT
TTTGCGCTCA AGGCCAATCT ATTAAGGCGT GAAATCGACT TTGGTCTGTA CAGTAAGGAA
ACGCTATTAC TGCTCGGGAT AGTGATTTTA GTGGTTGCCG CCTTTTCAGT GTTGCTTGGC
ACTTTTTACC CGCTGATTTA TGAACTCCTC AACCTAGGTA CACTTTCAGT CGGGGCGCCG
TACTTCAACG CCATATTTGT ACCATTGACC TTTTTAGTCG TACTACTGAT GGGGATTGCC
CCCCTCGTCG AATGGCAAAA TACCTCTAAG GCTCAAGCTA TGCCGATATT GCTGTTCGGC
TTTGGGGTAT TGGCTATCGC CTTTTGGGTA AGTCTACAGG CGGCGTCTGG CAGCAACTTA
TTCTTACTGC TTGGCACGGC GGCAGCCTTA TGGCTTATCG TGTGCTTATT ACTGACGCTG
TTAGTGAGTC TTAGTGTTCG CAAACGCGCC AGTACAAACC AAATTACAGC CAACGCGCCC
GTAAAATCCC GCACCTCAAA ACAACGCTTT ATCGGCATGA TGCTCGCCCA CCTCGGGGTT
GCCATCACCA TTATTGGTGC CTCAGCGGTA TCCAATTTTG AAGAAGAAGC ACTGCTCAGA
ATGGGCCCAG GCCAAGGTAA GCCGTTAGCG GGTTATATCT TAGTGTATGA AAGCACTGAG
AATGTCGAAA CCAATAGCTT TACGGCAATC CAAGCCAATA TCAGTATCCG CGATGGCGCG
AATGATGAAG AGATCCTCGG TTATGTAAGG CCGCAACGAC AAACTTTTAA AAGCAACGCG
ATGGAAATGT CCCACGCGGG GATCGACCAC GGTTTTTGGC GGGATATTTA TGTCTCAATG
GGCGTGCAAT TAAGTGACAG CGAATATCTG ATCCGTATTA GCTATAAACC ACTGGCCACT
TGGATTTGGC TGGGGGCACT TTTCATGATG CTCGGCGGCG CCATTGCCGC GTGGCCCGTA
AGGCAAGCTC GCCGCGTCGA ACAATCAGAA CAGCTCAGTA CAAGCTCATC ATCTGCAAGG
GAGACGGTAA CCCAATGA
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| Protein sequence | MIPEIGHILL IMSTVFALLS AASHLIGSYQ RNLYLIAFGN RLFYALFFTL LTALCSLVFS
FIADDFSVAY VANHSNSQLA LGYKVAAVWG SHEGSMLFWV FAIALWGAVI NWRQATHSAK
LDLENLQADK AYFGRVLAIL ALVILGFNLF LLFTSNPFAR LLPNIPVEGR DLNPILQDIG
LILHPPMLFL GYVGLTVCFA AALASLIGGK LPARHLDYLR PWVLLAWIFL TGGNAFGSWW
AYNELGWGGW WFWDPVENAS FIPWLVATAL VHSLVLTRKT QGFTLTTLFL CLLAFSLSLL
GSFLVRSGIV QSVHAFAADP TRGMSILSLL VIFVGAALLI FALKANLLRR EIDFGLYSKE
TLLLLGIVIL VVAAFSVLLG TFYPLIYELL NLGTLSVGAP YFNAIFVPLT FLVVLLMGIA
PLVEWQNTSK AQAMPILLFG FGVLAIAFWV SLQAASGSNL FLLLGTAAAL WLIVCLLLTL
LVSLSVRKRA STNQITANAP VKSRTSKQRF IGMMLAHLGV AITIIGASAV SNFEEEALLR
MGPGQGKPLA GYILVYESTE NVETNSFTAI QANISIRDGA NDEEILGYVR PQRQTFKSNA
MEMSHAGIDH GFWRDIYVSM GVQLSDSEYL IRISYKPLAT WIWLGALFMM LGGAIAAWPV
RQARRVEQSE QLSTSSSSAR ETVTQ
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