| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_0455 |
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| Symbol | |
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| ID | 1168330 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella oneidensis MR-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004347 |
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| Strand | - |
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| Start bp | 480304 |
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| End bp | 482337 |
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| Gene Length | 2034 bp |
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| Protein Length | 677 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 637342454 |
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| Product | transporter |
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| Protein accession | NP_716092 |
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| Protein GI | 24372050 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4666] TRAP-type uncharacterized transport system, fused permease components |
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| TIGRFAM ID | [TIGR02123] TRAP transporter, 4TM/12TM fusion protein |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCGATT CCGAACAAGG CCTAAGTGCA AATACCAGTG ACTGGCCCAA AGCGCTGTTT
TATTCAGCGC TTATTTTCTC GATTTTCCAA ATCATTACCG CTGCATTTCA CCCCGTATCA
ACCCAAGTGC TGCGGGCAAC CCACGTTGGT TTTTTACTTT TGGTGGTTTT TTTAAGCTAT
CCCGCTGTGG GCAAATCTCG ACCTTGGCAA CCCTTAGCTT GGCTGCTTGG CCTTGCAGGT
ATGGCAACGG CTGCCTATCA ATGGATTTTT GAGGCCGATC TGATCCAACG ATCGGGTGAG
TTAACCGATG CCGATATGGT CATGGGTATT ATTTTGATTG TATTAGTCTT TGAAGCCGCG
CGGCGGGTGA TGGGTTGGGC ATTACCGATC ATTTGCTGTA TCTTTTTGGC CTATGGCTTA
TTCGGCCAAT ATCTCCCCGG TGACTTAATG CACCGCGGCT ATGGCGTTGA CCAAATTATC
AATCAGTTAT CATTTGGAAC CGAGGGACTC TACGGCACCC CAACCTATGT GTCGGCAACC
TATATCTTCC TGTTTATTCT ATTTGGTGCC TTTTTAGAGC AGGCGGGAAT GATCCGTTTG
TTTACCGATT TTGCAATGGG ACTATTTGGC CATAAACTGG GTGGCCCAGC AAAAGTGGCC
GTAGTGTCAT CCGCCTTGAT GGGAACTATC ACAGGTTCTG GTGTCGCCAA CGTGGTGACT
ACAGGGCAAT TTACCATTCC TCTGATGAAA CGCTTTGGTT ACCGTCCCGC CTTTGCCGGT
GGTGTTGAAG CAACCTCCAG TATGGGTAGC CAAATCATGC CGCCCATTAT GGGCGCGGTT
GCCTTTATCA TGGCTGAAAC CATTAACGTG CCGTTTATTG AAATAGCCAA AGCGGCCTTA
CTACCAGCGT TACTGTATTT TTGCTCCGTT TTTTGGATGG TGCATTTAGA AGCCAAACGC
GCCAATCTTT GTGGCTTGCC CAAAGATCAG TGTCCCGATC CTTGGGCGGC GGTTAAAGCG
CGTTGGTATC TGCTTATTCC GTTGTTTATT TTGGTTTATT TGCTGTTTTC CGGTAGAACG
CCCCTGTTCT CTGGCATGGT CGGTTTAGCC CTGACTTCGA TAGTGATATT AGGTTCAGCC
ATTGTGCTGC GTCTGCCTTC TAATGCCTTA CGTTTTGCCT TTTGGATTGC CCTTGGCGTG
CTGTGCGCGG GCTTCTTTCA GATGGGGATT GGCGTGGTAT TTGGGGTCAT TGCCATACTC
GTTGCCATTT GTTGGTTTAT CAAAGGCGGT AAAGATACTC TGACCATTTG CTTACATGCA
TTGGTTGAAG GTGCGCGCCA TGCTGTACCT GTTGGGATTG CTTGCGCCTT AGTAGGGGTG
ATCATCGGTA TTGTCTCGCT CACGGGGATT GCTTCTACTT TTGCCAGCTA TATTCTCGCC
GTGGGGCAGG ATAACCTGTT CTTATCCTTA GTATTAACCA TGATCACTTG TCTGGTATTA
GGCATGGGAA TTCCGACCAT CCCTAACTAC ATTATCACCA GCTCAATTGC TGCGCCTGCA
TTATTGGATT TAGGCGTGCC GCTGATCGTC TCCCATATGT TTGTGTTTTA CTTTGGGATT
ATGGCTGACT TAACGCCACC CGTTGCCTTA GCCTGTTTTG CGGCCGCGCC GATTGCAAAG
GAGTCGGGGT TTAAGATCAG TCTGTGGGCG ATTCGTATCG CCATTGCAGG CTTTGTGATC
CCCTTTATGG CGGTTTACGA TCCGGCCCTA ATGCTCCAAA GCGATAGCTG GTTAGCCACT
ATTTATGTGC TGATTAAAGT CACTGTCGCC ATTGGAATTT GGGGCGTGGT CTTTACTGGC
TACCTGCTGC AAAAGCTGTA TCTGTGGGAG AGGGTCATCG GCTTCCTTGC GGGGGGTAGT
TTGATCCTTG CGACCCCTCT GAGTGATGAA ATTGGCTTTG GACTGGCGCT ACTGTTTATC
GTGCAACACA GCTTACGCGC GCGCAAACTC AAACGTCTTG CAGCGCAAGG ATAA
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| Protein sequence | MSDSEQGLSA NTSDWPKALF YSALIFSIFQ IITAAFHPVS TQVLRATHVG FLLLVVFLSY
PAVGKSRPWQ PLAWLLGLAG MATAAYQWIF EADLIQRSGE LTDADMVMGI ILIVLVFEAA
RRVMGWALPI ICCIFLAYGL FGQYLPGDLM HRGYGVDQII NQLSFGTEGL YGTPTYVSAT
YIFLFILFGA FLEQAGMIRL FTDFAMGLFG HKLGGPAKVA VVSSALMGTI TGSGVANVVT
TGQFTIPLMK RFGYRPAFAG GVEATSSMGS QIMPPIMGAV AFIMAETINV PFIEIAKAAL
LPALLYFCSV FWMVHLEAKR ANLCGLPKDQ CPDPWAAVKA RWYLLIPLFI LVYLLFSGRT
PLFSGMVGLA LTSIVILGSA IVLRLPSNAL RFAFWIALGV LCAGFFQMGI GVVFGVIAIL
VAICWFIKGG KDTLTICLHA LVEGARHAVP VGIACALVGV IIGIVSLTGI ASTFASYILA
VGQDNLFLSL VLTMITCLVL GMGIPTIPNY IITSSIAAPA LLDLGVPLIV SHMFVFYFGI
MADLTPPVAL ACFAAAPIAK ESGFKISLWA IRIAIAGFVI PFMAVYDPAL MLQSDSWLAT
IYVLIKVTVA IGIWGVVFTG YLLQKLYLWE RVIGFLAGGS LILATPLSDE IGFGLALLFI
VQHSLRARKL KRLAAQG
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