Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SO_0437 |
Symbol | |
ID | 1168313 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella oneidensis MR-1 |
Kingdom | Bacteria |
Replicon accession | NC_004347 |
Strand | + |
Start bp | 461211 |
End bp | 463781 |
Gene Length | 2571 bp |
Protein Length | 856 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 637342437 |
Product | sensory box protein |
Protein accession | NP_716074 |
Protein GI | 24372032 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCGCATAG GCAACAAAAT ATTGGTATTT ATTGTAGGGT TCTGTTTACC TGCGGTTGTG CTTGTCTCCT ATTGCCTCGG TGTTTGGTTT GACCATAGGG TCGAATTATT ACGTCAAGAT AATGTGCGGC ACGAGTTGGC GAATATCCAG CAGCAGTTTC GAATCGATGT TGATCGGTTA GGTTTTCTCA CTAATATCTA TGCCTCACCA TTATCTCATC TCGATAGTGA GCAGTTAAAA TCCCTCGAAT CCTCGTGGCT TGAGAGCTCC ATGTCTGGCA ATTTAAGCTG GTTTATTCTG CGCGACGGAA ATTTGCAAAA TGTTTTCCAG AACGAGCAAC CAATCGCAGA AGCCAATCGG CAGGAAATTG CTAAGGCGAT AACAACGCAG GCTAAGCCCG AGTTTGCAAG CGCCTATTTA ATTGGCGATA AAGGATATGT GGTGACGGCA GTCGCTTCAC ATCTGGGCGA GTATGTGTTG TTGGTGCGGC AACTTACTGA GCGTGATCTA CTGGAATATG CTCAAACCTC CCTCGTTGCT CGGGTCAGCA TGTCTAATGT TGTAACAGCC CATCATTCCT CACACTCAAG TTCGGTTGCG TTGCCGAGTT TGATTAGTCA GCAACCTATT TATCTTCACG TTGAATTTTC CGATGATCCC TTCCGTGATG TAAAACTTAG CCTCGACTGG GTGTCGCTCG CGGTGATCTT GCTGGGGATA TTGATTGTTG CCTTAGGTTA TGTTTGGTTG CGTGCGTGCC TATTACAGCC CTTTAAAAGC TTAATGCAGC AATTGGCGCT TGTTGATCCC ATGGCAAGTG TCTATCGGCC TGTTACCAGC GAGGGCAATG AAGAGTTATC TGTGCTGGCG AATAGAGTCA ATAGCCTACT CGCAAGGATT TATCAGCAGA AAGAGCGCGG TAAAATAACC TTAGAGTCGA TTGCCGAAGC CGTGATCTTG ACCGACATCG AGGCCAAGGT AATTTATATG AATCCTAAGG CCGAAACACT GCTTGAAGTT GCCAGTTCTA ATGCCGTTGG CGAGAGCCTT GCTAGTTTAT TAAAGGCGGG AGAGCAGTTA AATCAAGCGG TATTTCACTG TATTCGTCTT GGGGAAACAA TGCCTCAGGT CGCTAAAATC AAATTGTTAA CCACAATGCC GCGGATTATC GAACGTAGCA TTAGCAATGT CCTTAATCAT GAAAAAGAGA TTGTCGGAAC TGTGGTGGTG CTGCGGGATA TTACCCAAGA AGAACTTCTT AAGCATCAGC TACAAAAACG CGCTAATTTC GATGGCATCA CTGGGCTACT GAATCGGCAA GCATTTGAAG AACAACTGCC CGAATTTGCC AGTCAGGCGA GGAGCCTTGC AGTATGTTAT CTGGATTTAG AGCAGTTTAA GCTGATCAAT GATAGCTGTG GGCATACTGC GGGTGATCGT ATGTTGGCGA TGGTCGCTAG GGCGATTCAG TCATGTCTTG GGCCACAGGA ATTATTAGCC CGCATAGGAG GTGATGAGTT TGGATTGGTG ATTTGCGATC GCACCGCGTT AGCTGTGGCG CAGTTGCTGA AGCAAATTAT TGCTCAAGTA TCGCTGCAAG TGCTGCACGA CAAAAACTGC AACTACAAAG TGGGGTTAAG TATTGGTGTT GCCTTTGGAC GAGCGCCCTA TATTAATGCG CAAGAGTTAC TTAAGGATGC AGATATCGCC TGTATTGCCG CTAAAGCCAA GGGCACCAAC CAAATCCACA TTTACGATGA TAAAGATAAA GAGCTGACTT ATCAGCGCAA TGCTCCCAAA TGGGCGGTGC GTATTGCCCA GGCGATTGAA GAAAATGAAC TGCTACTTTA TTACCAGCCA ATCCGAGGAT TAGGCGCCAG TTCTAAACGC CAGCGGATGG AGGTTTTACT TAGGATCCAA GAGCCCTGCG GCCGTATTTT GGCGCCGGCG CAGTTTATTG CCGCAGCAGA GCGTTTTAAG CTGATGCCTG AAATTGATAA AGAAGTGATA CGTAAAGCCT TTTTATGGCT GTCTTTAAAT TCGCAGCTTT GGCAGGATCA CTGCATCTCA ATCAACCTTT CGGGCAATAG TTTAGGCGCC GAAGGCATGG TGGAATATAT CGCCAAGCAG CAACAGATTT TTGATATTCC GAGCCAATGT GTGTGCTTTG AAATTACTGA AACTACCGCT ATTCAAAACC GCCACCGCGG CATGGAAATG CTCAGACAGC TGCGCAAACT CGGGTTTTCC TTTGCATTGG ACGATTTTGG CAGTGGCTTT GCTTCCTACG GCTATTTACG CGAATTACCT GTGGATTACG TAAAAATAGA CGGCTGCTTT GTTAAAAACC TTGCCGTTAA TGCCAAGGAC TATGCCATCG TGAAATCCAT TCAAGACGTG TGTCGTGTTA TGGGGATCGA AACGGTTGCT GAATTTGTTG AAAATCAAGA GATTATTGAT AGGTTGCAAA CGATTGGTAT CAACTATGCG CAAGGTTATG CAATCGGACG GCCGCAACCT TTAGCGAGTT ATTGCGAGCA GTTTGAGACG CGCTTAGCAC AACGCGCATA G
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Protein sequence | MRIGNKILVF IVGFCLPAVV LVSYCLGVWF DHRVELLRQD NVRHELANIQ QQFRIDVDRL GFLTNIYASP LSHLDSEQLK SLESSWLESS MSGNLSWFIL RDGNLQNVFQ NEQPIAEANR QEIAKAITTQ AKPEFASAYL IGDKGYVVTA VASHLGEYVL LVRQLTERDL LEYAQTSLVA RVSMSNVVTA HHSSHSSSVA LPSLISQQPI YLHVEFSDDP FRDVKLSLDW VSLAVILLGI LIVALGYVWL RACLLQPFKS LMQQLALVDP MASVYRPVTS EGNEELSVLA NRVNSLLARI YQQKERGKIT LESIAEAVIL TDIEAKVIYM NPKAETLLEV ASSNAVGESL ASLLKAGEQL NQAVFHCIRL GETMPQVAKI KLLTTMPRII ERSISNVLNH EKEIVGTVVV LRDITQEELL KHQLQKRANF DGITGLLNRQ AFEEQLPEFA SQARSLAVCY LDLEQFKLIN DSCGHTAGDR MLAMVARAIQ SCLGPQELLA RIGGDEFGLV ICDRTALAVA QLLKQIIAQV SLQVLHDKNC NYKVGLSIGV AFGRAPYINA QELLKDADIA CIAAKAKGTN QIHIYDDKDK ELTYQRNAPK WAVRIAQAIE ENELLLYYQP IRGLGASSKR QRMEVLLRIQ EPCGRILAPA QFIAAAERFK LMPEIDKEVI RKAFLWLSLN SQLWQDHCIS INLSGNSLGA EGMVEYIAKQ QQIFDIPSQC VCFEITETTA IQNRHRGMEM LRQLRKLGFS FALDDFGSGF ASYGYLRELP VDYVKIDGCF VKNLAVNAKD YAIVKSIQDV CRVMGIETVA EFVENQEIID RLQTIGINYA QGYAIGRPQP LASYCEQFET RLAQRA
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