Gene SO_0435 details

Gene Information

• Locus tag: SO_0435
• Symbol: hemE
• ID: 1168312
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella oneidensis MR-1
• Kingdom: Bacteria
• Replicon accession: NC_004347
• Strand: +
• Start bp: 459487
• End bp: 460551
• Gene Length: 1065 bp
• Protein Length: 354 aa
• Translation table: 11
• GC content: 48%
• IMG OID: 637342436
• Product: uroporphyrinogen decarboxylase
• Protein accession: NP_716072
• Protein GI: 24372030
• COG category: [H] Coenzyme transport and metabolism
• COG ID: [COG0407] Uroporphyrinogen-III decarboxylase
• TIGRFAM ID: [TIGR01464] uroporphyrinogen decarboxylase

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCAGAAT TAAAGAATGA TCGTTATTTA CGCGCCCTAC TAAAACAGCC TGTTGATATG 
ACCCCTGTGT GGATGATGCG TCAAGCGGGC CGTTATCTCC CTGAATATAA AGCAACTCGC 
GCCCAGGCGG GTGATTTTAT GTCTTTATGT AAAAACCACG AATTGGCCTG TGAAGTGACG 
CTACAACCGC TGCGTCGTTA CGAGCTAGAT GCGGCGATTC TGTTTTCCGA CATTCTGACG 
GTTCCCGATG CTATGGGATT AGGTCTGTAT TTTGAGGCGG GTGAAGGCCC ACGTTTTGAG 
CGCCCGACAG ACACTATTGA TGCCATCAAA AAATTATCAA TTCCTGATCC AGAAGATGAG 
CTGGGTTATG TGATGAAGGC GGTGAGTACA ATTCGTCGTG AATTGAATGG TCAAGTGCCA 
TTAATCGGCT TCTCAGGTTC ACCTTGGACG CTGGCCACTT ATATGGTTGA AGGCGGTTCG 
AGCAAAACCT TCGAAAAAAT CAAAAAAATG GCCTATGCCG AGCCTGCTGC ACTGCATATG 
TTACTCGACA AGTTAGCTGA CTCAGTGACT TTATACCTGA ATGCGCAGGT CGCTAATGGT 
GCTCAATCTT TAATGATTTT CGACTCTTGG GGCGGTGCAT TGTCGCATAC AGCTTACCGT 
GAGTTTTCAC TGCGTTATAT GCAGAAGATT GTCGATGGTC TGACTCGCTT TGCCGATGGT 
CGCCAAGTAC CAGTAACCCT ATTCACTAAA GGTGGTGGCT TATGGTTAGA AGCCATGGCG 
GAAACCGGTT GTGACGCCTT AGGTTTAGAC TGGACGGTGG ATATTGCCGA TGCTCGTCGC 
CGTGTAGGCC ATAAAGTTGC GCTACAAGGC AACATGGACC CATCTATGTT ATATGCACCT 
ATCCCACGCA TTGAAGAGGA AGTTGGTCAA ATCCTTGCGG GATACGGTGA AGGTACAGGC 
CACGTATTTA ACTTAGGCCA TGGTATTCAC CAGCATGTCG ATCCAGAGCA TGCAGGCGCC 
TTTATTAAGG CGGTCCACGC TCAATCTAAG CAATACCATA AGTAA 

 

Protein sequence

MAELKNDRYL RALLKQPVDM TPVWMMRQAG RYLPEYKATR AQAGDFMSLC KNHELACEVT 
LQPLRRYELD AAILFSDILT VPDAMGLGLY FEAGEGPRFE RPTDTIDAIK KLSIPDPEDE 
LGYVMKAVST IRRELNGQVP LIGFSGSPWT LATYMVEGGS SKTFEKIKKM AYAEPAALHM 
LLDKLADSVT LYLNAQVANG AQSLMIFDSW GGALSHTAYR EFSLRYMQKI VDGLTRFADG 
RQVPVTLFTK GGGLWLEAMA ETGCDALGLD WTVDIADARR RVGHKVALQG NMDPSMLYAP 
IPRIEEEVGQ ILAGYGEGTG HVFNLGHGIH QHVDPEHAGA FIKAVHAQSK QYHK