Gene SO_0427 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSO_0427 
Symbol 
ID1168305 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella oneidensis MR-1 
KingdomBacteria 
Replicon accessionNC_004347 
Strand
Start bp444828 
End bp449303 
Gene Length4476 bp 
Protein Length1491 aa 
Translation table11 
GC content44% 
IMG OID637342429 
Productsensory box protein 
Protein accessionNP_716064 
Protein GI24372022 
COG category[T] Signal transduction mechanisms 
COG ID[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAAAAA TAATAATTCA CTTCCTTTTG GCATCTATGT TGGTTTTCTG CTCTGGTCTG 
TATTCAGCTT GGGCTGGTAA TTTTGTGCAG CGGGTTTTTA CCGATAGGGA CGGACTTGAA
GCAACCAGTA TTCGAGCGCT CACACTCGAT GACCATGGCT TTATCTGGGC GGCAACGGAG
CAAGGTTTAT ATCGAGTTAG TAATTCTAAA GTGAGGCGGA TTGATAAAAC CGGTTCCGAG
TTACGCCTTG CCGATGAGTT TATAACGACC GTCGTCAATA TTGATCGAGA TTTATTGTTG
CTGAGTACCA ATGCGGCAAC CTATCTGTAT AACATCGCCA AAAATCAGTT TATTCAAATG
GGTTCGCCCA ATTTATTCCC ACATTTTTCA GGTGGCGTGT TAATTTCTGC TGTTCGTAAA
AATGCCCAAG AATGGCGCTT GTTGATTGAT AACGGCCAGA TTTACGATTT ATCGACCGCA
ACGTTAACCT TAACCTTAGT CACTCAGTTA CCCGTTAATC GTGATTTACC TTGGCGCAAG
TTGCTGAGCA TGCCGGATGG TCAGATCCTT GTCGCAGGGC AATTCCAATT GTTGCTTCTT
AATCACTTGG GGGAAAAGCT AGTTGATTAT CAATGGACTG AGTCCATGGG TAACATTCTG
GATATGCTTG AGGATTCAAA GCAGCGCATT TGGATTGCGA CCAGTCGAGG CGTTTATCGA
TTTGAACCTC AGACCTTGCA GATTTCGCCA GTGCCTGAAT TACCGGATTG GAGCACGGCT
ATGGTTGAAG ACCGTCATGG TGAGATTTGG TTTTCAAGCC GCGCGGGATT ATTGAAGTGG
TCACCAGATA CTCATCAGCT TGAAAATTAT CAACAAGAGC TTAAGGCTCA AGCCAATATG
GAAACATTAA AGGCAATCTT GTTTGATAAA TCAGGTTTGA TGTGGGTCGG TGGTTCTGGA
GATGGTTTAG CTTTACTGGC TTCACAGCCG GATTTCATTC TCGACACTTT CACCAGTGAA
CCGCCCCATG AATTATCGGA TGCTATGGTA TGGTCGGTGT TTGCAAGTGA TGAAGGGTTA
TGGTTTGGTG CTTCACACCT CAGCTTTATC GCTCGAAATA GCCAAAAAGC CGTGACCATA
GACATTGATG GATTAAAGCC CCATGAGAGT ATCTATGGGA TCAGTGATTT TATTGATCAC
TACTTATTAG TTTCTACCAC CAGTGGTTTG TTTGTTGTGG ATAAGCTGAC CTTAAAAGGG
AGCAGTTTTG CCCAGTGGGC GCATGGAAGT GAAGCATTTA AAAATAAAGT CATCTATGGC
ACCTATGCCG ATCCCAAGCT AAAAGGACGA TTTTGGATTG CATCGGCTAC GGGCCTGTAT
TTTTGGGAGC AGGGGCTATT TGAGCCGCAG CCTTTTAACA TTGATGGGCC AACGGGGGAT
GATTCGCCTG AGCTCAAGCG GCCAACAATC CGTACTTTGT ATCGTGCTTC CGATGGTAAG
TTATGGATAA GTGGACGAAA AGTTTTTGGT TATATTGACG AGCAAAATCT TTTCCATGAT
CAAAGGCAAT TGTTTAGCGG CTTAAATTCT GAGCCGTCAA TTAGTCATCT TGAAGAAATA
TCTCCCGGAG TGATGTGGTT TGGCTCCTAC GAGAGGGGCT TATTCGAGTA CCACCTCCAA
GATGGCAAAC TTGTTTCACT CACTTTACAG TGGCAAGTTA ACTGTAGTTC AGTGTTTTTC
ATACAAAAGA CCACTAATGC CAACATAGTG GCCTGCGCTG ATTCGCTTAT TCGCCAAGAT
AGGGCGTCTG GGCAAATCGC GATGTTTACT CAGCTTGATG GCCTGATTTC TAACGAGATG
AATGAAGGCG CCTATTTTTA CTCTCCAGGG GCTGGATTAT ATATTGGTAC GCCAGAAGGG
GTGATGCATC TCGATGCCGA TAAGCTGACG AACCGCATTG CTGATGATCA TGTGATGTTA
GAGTCGGTAT CGGTTTATTA CGACAATAAC ACCCAAGTCT CACTATTGCC TCAGCCCATG
ATGGTGATTA AACCTGGCGC CAATATGGTG AGTCTGCAAA TTACCAATTT GGATTACCTT
GATGATTCTC CTATTCAATT TAAATATCGG CTTAGATACC AAGGTGACGA AGATAACTAT
GTACTCCTTC AGGGGGAATC GCAGATTAAC CTTGCAGGTT TAGCTGCTGG GGAATATGTA
CTTGAGGTCT TAAGCCAAGT TAACGGTATT TGGTCGGATA AGCCCTTCAC CTTTCCTTTC
TATGTTGAGC AGCATTGGTG GCTCTCTCAA GGATTTAAAG GCATCTTGCT GTTAGTCTTT
TCGATTATTG CACTGGGTTT AGCTTGGTAC CGCCAGCGTC AGGTTCGCAC CTTTATGGCC
ATGAACCAAG CGTTAACCGA AAGTGATGAT CGCCTCAGAC AATCGTTACG GGGCAGTGAC
TCGGATTTGT GGGAATGGCA CAGGGATACC CAGTGTTTTT ACCTCGATAA CCGCGGTTAT
GTATTGGGAA ACCATGCAAA CGAAATTGTA CTTACCCTTG AAACGCTTCC CGTTCATCCT
TTGGATCGAG AAAAAGTGCT TATACAGTGG AATCGTATGT TAAGTGGTGA CCTCGATCGA
TTTGAAGCCG AATATCGCTA TCATCGCAGA GATGGCAATT GGGGGTGGTT GCGGGTGCGT
GGGCGTCCTG TGGCTCGCAA TAAACAGACT CAGGAAATTG AGCGGGTTGC GGGGATTTAT
AGTGATATTA CCCTACGACG TCAGCTTGAA GATGAGGTAA GCCTCTTAGC CCAAGCATTT
GAAAATACAT CTGAAGGTGT GTTGATTTTA GATGTGGATG AAAATATTCG AGTTGCCAAC
CATGCCGCAC AGCACATTAT TGGCTCTGAA CAAAAGAGTC TTGTCGGCTT ATCGTTTTCG
CAGTTTGTCC AAATGAAAGA TGGATTGTCT ACTGAGGTGG CCCAGTTGCT TGGTCAGGAA
ACCTCATGGA CGGGGGAACG TGAGTTAGTG GGGCAAAATG GCTTGGTATG TCCAGTGTGG
CTTAACGTGT CAGTGATGCA GTCAGTGAAT CAAAATGCCA TTCATTATGT AGTTGTATTT
TCTGATATTA CCGAGCGTAA GCGTACAGAG GCGGATCTTA GACGTCTGGC CAATTACGAT
GTATTAACAG GGCTACCTAA TCGCTCTTTA TTCTCGAATC GGTTGATGCA ATCGATACAA
GCGGCGGAGC AAAACGGTGA AAAATTAGCG TTATTGTTCC TTGACCTCGA TAGATTTAAG
CATGTGAATG ACTCCTATGG CCACAGTATG GGGGATGCAC TCTTAGTTGA GGCATCAAAT
CGGCTACAGT CTTGTATCGG GAGTGAGCAT TTACTCTGTC GTTTTGGCGG TGATGAGTTT
GTTATTTTAT TAAAGAATGT CAAAGAATTA TCCGATATCA ACCATTTGGC TGAGCAGCTA
CTCGCACAAA TCGTAGCCCC CTTTAGGTTG TTTGGTCGCG AGTTTTACAT TTCAACCAGT
ATTGGGATCA GTATTTGGCC CGATGATGCA ATGCAGCCAG AAGCCTTCAT TAAAAATGCG
GATCTGGCCA TGTATCACGC CAAGGAGGAA GGGCGCGGTA ACTTCAAATA TTATTCATCA
GAGCGTAATG CCCAAGCGTT ATACCATTTA CGGCTAGAGG CCGATTTACG TAAAGCGATA
GAGCGGCAAG AATTTGAACT GTATTACCAA CCACAAATTG ATATTTTGCG GGGGGATAAA
TTTATTGGGA TGGAAGCGCT CATTCGCTGG CAGCATCCCG TCGATGGCTT TGTTCGCCCG
GATATTTTTA TTAAAGTTGC TGAAGCTTGT GGTTTAGTCG TTGATATTGA TCGCTGGGTC
TTGCGCTGTG CGTGTTTGGA TGGGGCAAGA TGGGCTAAAC AAACGATAGA GCCGTTTAAA
ATGTCGGTTA ACATTTCAGC CGTGCATTTC CGTCAACCCG ACTTTATTGA CGGTGTAAAG
AAAATACTTG ATGCTACCCA CATGCCAGCT TCGTCTTTGT GTTTAGAAAT TACTGAAGGG
GTATTAATGA AAGAGTTGCA AGTGGCCAAG ACCCATTTAA AGCAACTTGA TGACCTAGGA
ATTGAAGTTG CGATTGACGA CTTTGGTACT GGATACTCCT CTTTAGCTTA TTTGCGTAAT
TTTGAAGTGG ATACACTTAA AATTGACCGT TCGTTTTTGA TCGATATCGC CTCAAATGGT
GCAGATCAGG CTATTGTGAG CAGTATTATT GAGCTGGCGC GTAATTTAAA GTTAACCGTT
ATCGCTGAAG GGGTTGAGAC CGTAGAACAG TTAGAGCAGC TTTTTAGCCG TGGCTGTTAT
ATTGTTCAGG GATATTATTT TGCTAAGCCT ATGTCTGTCA GTGATTTTGA GAAATATCTA
CAGTCGCAGT ATCCGCTTGA TTCATTGCAA TCTTAA
 
Protein sequence
MKKIIIHFLL ASMLVFCSGL YSAWAGNFVQ RVFTDRDGLE ATSIRALTLD DHGFIWAATE 
QGLYRVSNSK VRRIDKTGSE LRLADEFITT VVNIDRDLLL LSTNAATYLY NIAKNQFIQM
GSPNLFPHFS GGVLISAVRK NAQEWRLLID NGQIYDLSTA TLTLTLVTQL PVNRDLPWRK
LLSMPDGQIL VAGQFQLLLL NHLGEKLVDY QWTESMGNIL DMLEDSKQRI WIATSRGVYR
FEPQTLQISP VPELPDWSTA MVEDRHGEIW FSSRAGLLKW SPDTHQLENY QQELKAQANM
ETLKAILFDK SGLMWVGGSG DGLALLASQP DFILDTFTSE PPHELSDAMV WSVFASDEGL
WFGASHLSFI ARNSQKAVTI DIDGLKPHES IYGISDFIDH YLLVSTTSGL FVVDKLTLKG
SSFAQWAHGS EAFKNKVIYG TYADPKLKGR FWIASATGLY FWEQGLFEPQ PFNIDGPTGD
DSPELKRPTI RTLYRASDGK LWISGRKVFG YIDEQNLFHD QRQLFSGLNS EPSISHLEEI
SPGVMWFGSY ERGLFEYHLQ DGKLVSLTLQ WQVNCSSVFF IQKTTNANIV ACADSLIRQD
RASGQIAMFT QLDGLISNEM NEGAYFYSPG AGLYIGTPEG VMHLDADKLT NRIADDHVML
ESVSVYYDNN TQVSLLPQPM MVIKPGANMV SLQITNLDYL DDSPIQFKYR LRYQGDEDNY
VLLQGESQIN LAGLAAGEYV LEVLSQVNGI WSDKPFTFPF YVEQHWWLSQ GFKGILLLVF
SIIALGLAWY RQRQVRTFMA MNQALTESDD RLRQSLRGSD SDLWEWHRDT QCFYLDNRGY
VLGNHANEIV LTLETLPVHP LDREKVLIQW NRMLSGDLDR FEAEYRYHRR DGNWGWLRVR
GRPVARNKQT QEIERVAGIY SDITLRRQLE DEVSLLAQAF ENTSEGVLIL DVDENIRVAN
HAAQHIIGSE QKSLVGLSFS QFVQMKDGLS TEVAQLLGQE TSWTGERELV GQNGLVCPVW
LNVSVMQSVN QNAIHYVVVF SDITERKRTE ADLRRLANYD VLTGLPNRSL FSNRLMQSIQ
AAEQNGEKLA LLFLDLDRFK HVNDSYGHSM GDALLVEASN RLQSCIGSEH LLCRFGGDEF
VILLKNVKEL SDINHLAEQL LAQIVAPFRL FGREFYISTS IGISIWPDDA MQPEAFIKNA
DLAMYHAKEE GRGNFKYYSS ERNAQALYHL RLEADLRKAI ERQEFELYYQ PQIDILRGDK
FIGMEALIRW QHPVDGFVRP DIFIKVAEAC GLVVDIDRWV LRCACLDGAR WAKQTIEPFK
MSVNISAVHF RQPDFIDGVK KILDATHMPA SSLCLEITEG VLMKELQVAK THLKQLDDLG
IEVAIDDFGT GYSSLAYLRN FEVDTLKIDR SFLIDIASNG ADQAIVSSII ELARNLKLTV
IAEGVETVEQ LEQLFSRGCY IVQGYYFAKP MSVSDFEKYL QSQYPLDSLQ S