| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_0427 |
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| Symbol | |
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| ID | 1168305 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella oneidensis MR-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004347 |
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| Strand | + |
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| Start bp | 444828 |
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| End bp | 449303 |
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| Gene Length | 4476 bp |
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| Protein Length | 1491 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 637342429 |
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| Product | sensory box protein |
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| Protein accession | NP_716064 |
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| Protein GI | 24372022 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAAAAA TAATAATTCA CTTCCTTTTG GCATCTATGT TGGTTTTCTG CTCTGGTCTG
TATTCAGCTT GGGCTGGTAA TTTTGTGCAG CGGGTTTTTA CCGATAGGGA CGGACTTGAA
GCAACCAGTA TTCGAGCGCT CACACTCGAT GACCATGGCT TTATCTGGGC GGCAACGGAG
CAAGGTTTAT ATCGAGTTAG TAATTCTAAA GTGAGGCGGA TTGATAAAAC CGGTTCCGAG
TTACGCCTTG CCGATGAGTT TATAACGACC GTCGTCAATA TTGATCGAGA TTTATTGTTG
CTGAGTACCA ATGCGGCAAC CTATCTGTAT AACATCGCCA AAAATCAGTT TATTCAAATG
GGTTCGCCCA ATTTATTCCC ACATTTTTCA GGTGGCGTGT TAATTTCTGC TGTTCGTAAA
AATGCCCAAG AATGGCGCTT GTTGATTGAT AACGGCCAGA TTTACGATTT ATCGACCGCA
ACGTTAACCT TAACCTTAGT CACTCAGTTA CCCGTTAATC GTGATTTACC TTGGCGCAAG
TTGCTGAGCA TGCCGGATGG TCAGATCCTT GTCGCAGGGC AATTCCAATT GTTGCTTCTT
AATCACTTGG GGGAAAAGCT AGTTGATTAT CAATGGACTG AGTCCATGGG TAACATTCTG
GATATGCTTG AGGATTCAAA GCAGCGCATT TGGATTGCGA CCAGTCGAGG CGTTTATCGA
TTTGAACCTC AGACCTTGCA GATTTCGCCA GTGCCTGAAT TACCGGATTG GAGCACGGCT
ATGGTTGAAG ACCGTCATGG TGAGATTTGG TTTTCAAGCC GCGCGGGATT ATTGAAGTGG
TCACCAGATA CTCATCAGCT TGAAAATTAT CAACAAGAGC TTAAGGCTCA AGCCAATATG
GAAACATTAA AGGCAATCTT GTTTGATAAA TCAGGTTTGA TGTGGGTCGG TGGTTCTGGA
GATGGTTTAG CTTTACTGGC TTCACAGCCG GATTTCATTC TCGACACTTT CACCAGTGAA
CCGCCCCATG AATTATCGGA TGCTATGGTA TGGTCGGTGT TTGCAAGTGA TGAAGGGTTA
TGGTTTGGTG CTTCACACCT CAGCTTTATC GCTCGAAATA GCCAAAAAGC CGTGACCATA
GACATTGATG GATTAAAGCC CCATGAGAGT ATCTATGGGA TCAGTGATTT TATTGATCAC
TACTTATTAG TTTCTACCAC CAGTGGTTTG TTTGTTGTGG ATAAGCTGAC CTTAAAAGGG
AGCAGTTTTG CCCAGTGGGC GCATGGAAGT GAAGCATTTA AAAATAAAGT CATCTATGGC
ACCTATGCCG ATCCCAAGCT AAAAGGACGA TTTTGGATTG CATCGGCTAC GGGCCTGTAT
TTTTGGGAGC AGGGGCTATT TGAGCCGCAG CCTTTTAACA TTGATGGGCC AACGGGGGAT
GATTCGCCTG AGCTCAAGCG GCCAACAATC CGTACTTTGT ATCGTGCTTC CGATGGTAAG
TTATGGATAA GTGGACGAAA AGTTTTTGGT TATATTGACG AGCAAAATCT TTTCCATGAT
CAAAGGCAAT TGTTTAGCGG CTTAAATTCT GAGCCGTCAA TTAGTCATCT TGAAGAAATA
TCTCCCGGAG TGATGTGGTT TGGCTCCTAC GAGAGGGGCT TATTCGAGTA CCACCTCCAA
GATGGCAAAC TTGTTTCACT CACTTTACAG TGGCAAGTTA ACTGTAGTTC AGTGTTTTTC
ATACAAAAGA CCACTAATGC CAACATAGTG GCCTGCGCTG ATTCGCTTAT TCGCCAAGAT
AGGGCGTCTG GGCAAATCGC GATGTTTACT CAGCTTGATG GCCTGATTTC TAACGAGATG
AATGAAGGCG CCTATTTTTA CTCTCCAGGG GCTGGATTAT ATATTGGTAC GCCAGAAGGG
GTGATGCATC TCGATGCCGA TAAGCTGACG AACCGCATTG CTGATGATCA TGTGATGTTA
GAGTCGGTAT CGGTTTATTA CGACAATAAC ACCCAAGTCT CACTATTGCC TCAGCCCATG
ATGGTGATTA AACCTGGCGC CAATATGGTG AGTCTGCAAA TTACCAATTT GGATTACCTT
GATGATTCTC CTATTCAATT TAAATATCGG CTTAGATACC AAGGTGACGA AGATAACTAT
GTACTCCTTC AGGGGGAATC GCAGATTAAC CTTGCAGGTT TAGCTGCTGG GGAATATGTA
CTTGAGGTCT TAAGCCAAGT TAACGGTATT TGGTCGGATA AGCCCTTCAC CTTTCCTTTC
TATGTTGAGC AGCATTGGTG GCTCTCTCAA GGATTTAAAG GCATCTTGCT GTTAGTCTTT
TCGATTATTG CACTGGGTTT AGCTTGGTAC CGCCAGCGTC AGGTTCGCAC CTTTATGGCC
ATGAACCAAG CGTTAACCGA AAGTGATGAT CGCCTCAGAC AATCGTTACG GGGCAGTGAC
TCGGATTTGT GGGAATGGCA CAGGGATACC CAGTGTTTTT ACCTCGATAA CCGCGGTTAT
GTATTGGGAA ACCATGCAAA CGAAATTGTA CTTACCCTTG AAACGCTTCC CGTTCATCCT
TTGGATCGAG AAAAAGTGCT TATACAGTGG AATCGTATGT TAAGTGGTGA CCTCGATCGA
TTTGAAGCCG AATATCGCTA TCATCGCAGA GATGGCAATT GGGGGTGGTT GCGGGTGCGT
GGGCGTCCTG TGGCTCGCAA TAAACAGACT CAGGAAATTG AGCGGGTTGC GGGGATTTAT
AGTGATATTA CCCTACGACG TCAGCTTGAA GATGAGGTAA GCCTCTTAGC CCAAGCATTT
GAAAATACAT CTGAAGGTGT GTTGATTTTA GATGTGGATG AAAATATTCG AGTTGCCAAC
CATGCCGCAC AGCACATTAT TGGCTCTGAA CAAAAGAGTC TTGTCGGCTT ATCGTTTTCG
CAGTTTGTCC AAATGAAAGA TGGATTGTCT ACTGAGGTGG CCCAGTTGCT TGGTCAGGAA
ACCTCATGGA CGGGGGAACG TGAGTTAGTG GGGCAAAATG GCTTGGTATG TCCAGTGTGG
CTTAACGTGT CAGTGATGCA GTCAGTGAAT CAAAATGCCA TTCATTATGT AGTTGTATTT
TCTGATATTA CCGAGCGTAA GCGTACAGAG GCGGATCTTA GACGTCTGGC CAATTACGAT
GTATTAACAG GGCTACCTAA TCGCTCTTTA TTCTCGAATC GGTTGATGCA ATCGATACAA
GCGGCGGAGC AAAACGGTGA AAAATTAGCG TTATTGTTCC TTGACCTCGA TAGATTTAAG
CATGTGAATG ACTCCTATGG CCACAGTATG GGGGATGCAC TCTTAGTTGA GGCATCAAAT
CGGCTACAGT CTTGTATCGG GAGTGAGCAT TTACTCTGTC GTTTTGGCGG TGATGAGTTT
GTTATTTTAT TAAAGAATGT CAAAGAATTA TCCGATATCA ACCATTTGGC TGAGCAGCTA
CTCGCACAAA TCGTAGCCCC CTTTAGGTTG TTTGGTCGCG AGTTTTACAT TTCAACCAGT
ATTGGGATCA GTATTTGGCC CGATGATGCA ATGCAGCCAG AAGCCTTCAT TAAAAATGCG
GATCTGGCCA TGTATCACGC CAAGGAGGAA GGGCGCGGTA ACTTCAAATA TTATTCATCA
GAGCGTAATG CCCAAGCGTT ATACCATTTA CGGCTAGAGG CCGATTTACG TAAAGCGATA
GAGCGGCAAG AATTTGAACT GTATTACCAA CCACAAATTG ATATTTTGCG GGGGGATAAA
TTTATTGGGA TGGAAGCGCT CATTCGCTGG CAGCATCCCG TCGATGGCTT TGTTCGCCCG
GATATTTTTA TTAAAGTTGC TGAAGCTTGT GGTTTAGTCG TTGATATTGA TCGCTGGGTC
TTGCGCTGTG CGTGTTTGGA TGGGGCAAGA TGGGCTAAAC AAACGATAGA GCCGTTTAAA
ATGTCGGTTA ACATTTCAGC CGTGCATTTC CGTCAACCCG ACTTTATTGA CGGTGTAAAG
AAAATACTTG ATGCTACCCA CATGCCAGCT TCGTCTTTGT GTTTAGAAAT TACTGAAGGG
GTATTAATGA AAGAGTTGCA AGTGGCCAAG ACCCATTTAA AGCAACTTGA TGACCTAGGA
ATTGAAGTTG CGATTGACGA CTTTGGTACT GGATACTCCT CTTTAGCTTA TTTGCGTAAT
TTTGAAGTGG ATACACTTAA AATTGACCGT TCGTTTTTGA TCGATATCGC CTCAAATGGT
GCAGATCAGG CTATTGTGAG CAGTATTATT GAGCTGGCGC GTAATTTAAA GTTAACCGTT
ATCGCTGAAG GGGTTGAGAC CGTAGAACAG TTAGAGCAGC TTTTTAGCCG TGGCTGTTAT
ATTGTTCAGG GATATTATTT TGCTAAGCCT ATGTCTGTCA GTGATTTTGA GAAATATCTA
CAGTCGCAGT ATCCGCTTGA TTCATTGCAA TCTTAA
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| Protein sequence | MKKIIIHFLL ASMLVFCSGL YSAWAGNFVQ RVFTDRDGLE ATSIRALTLD DHGFIWAATE
QGLYRVSNSK VRRIDKTGSE LRLADEFITT VVNIDRDLLL LSTNAATYLY NIAKNQFIQM
GSPNLFPHFS GGVLISAVRK NAQEWRLLID NGQIYDLSTA TLTLTLVTQL PVNRDLPWRK
LLSMPDGQIL VAGQFQLLLL NHLGEKLVDY QWTESMGNIL DMLEDSKQRI WIATSRGVYR
FEPQTLQISP VPELPDWSTA MVEDRHGEIW FSSRAGLLKW SPDTHQLENY QQELKAQANM
ETLKAILFDK SGLMWVGGSG DGLALLASQP DFILDTFTSE PPHELSDAMV WSVFASDEGL
WFGASHLSFI ARNSQKAVTI DIDGLKPHES IYGISDFIDH YLLVSTTSGL FVVDKLTLKG
SSFAQWAHGS EAFKNKVIYG TYADPKLKGR FWIASATGLY FWEQGLFEPQ PFNIDGPTGD
DSPELKRPTI RTLYRASDGK LWISGRKVFG YIDEQNLFHD QRQLFSGLNS EPSISHLEEI
SPGVMWFGSY ERGLFEYHLQ DGKLVSLTLQ WQVNCSSVFF IQKTTNANIV ACADSLIRQD
RASGQIAMFT QLDGLISNEM NEGAYFYSPG AGLYIGTPEG VMHLDADKLT NRIADDHVML
ESVSVYYDNN TQVSLLPQPM MVIKPGANMV SLQITNLDYL DDSPIQFKYR LRYQGDEDNY
VLLQGESQIN LAGLAAGEYV LEVLSQVNGI WSDKPFTFPF YVEQHWWLSQ GFKGILLLVF
SIIALGLAWY RQRQVRTFMA MNQALTESDD RLRQSLRGSD SDLWEWHRDT QCFYLDNRGY
VLGNHANEIV LTLETLPVHP LDREKVLIQW NRMLSGDLDR FEAEYRYHRR DGNWGWLRVR
GRPVARNKQT QEIERVAGIY SDITLRRQLE DEVSLLAQAF ENTSEGVLIL DVDENIRVAN
HAAQHIIGSE QKSLVGLSFS QFVQMKDGLS TEVAQLLGQE TSWTGERELV GQNGLVCPVW
LNVSVMQSVN QNAIHYVVVF SDITERKRTE ADLRRLANYD VLTGLPNRSL FSNRLMQSIQ
AAEQNGEKLA LLFLDLDRFK HVNDSYGHSM GDALLVEASN RLQSCIGSEH LLCRFGGDEF
VILLKNVKEL SDINHLAEQL LAQIVAPFRL FGREFYISTS IGISIWPDDA MQPEAFIKNA
DLAMYHAKEE GRGNFKYYSS ERNAQALYHL RLEADLRKAI ERQEFELYYQ PQIDILRGDK
FIGMEALIRW QHPVDGFVRP DIFIKVAEAC GLVVDIDRWV LRCACLDGAR WAKQTIEPFK
MSVNISAVHF RQPDFIDGVK KILDATHMPA SSLCLEITEG VLMKELQVAK THLKQLDDLG
IEVAIDDFGT GYSSLAYLRN FEVDTLKIDR SFLIDIASNG ADQAIVSSII ELARNLKLTV
IAEGVETVEQ LEQLFSRGCY IVQGYYFAKP MSVSDFEKYL QSQYPLDSLQ S
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