| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_0422 |
|---|
| Symbol | ampE |
|---|
| ID | 1168300 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella oneidensis MR-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004347 |
|---|
| Strand | + |
|---|
| Start bp | 436277 |
|---|
| End bp | 437128 |
|---|
| Gene Length | 852 bp |
|---|
| Protein Length | 283 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 637342424 |
|---|
| Product | regulatory protein AmpE |
|---|
| Protein accession | NP_716059 |
|---|
| Protein GI | 24372017 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG3725] Membrane protein required for beta-lactamase induction |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCATTAT TTTCATTACT GGTCGCCATT CTTGTGGAGC GATTAAAGTT TCTTCCCGCT
GCTTGGCAAT GTGATCGCGT ACTGCAATCT TACCAATCTA CCTTTTTTGG TGATAAAGCA
TCCCTTAACA ACACCAATAT GCTGTTGGCA TTGATATTAC CCGCCGTTGT GGTTTATCTG
TTGGGCTGGA TTGTGTCTGA TATGTTTTGG GGACTGTTAA ACCTCGCCCT ATGGGTGCTG
GTGGCAATTA TTTGTTTTAA CCATCAAAAA CAACGCGATA CTTTTAAAAA ATATATGCAG
GCAGCTTGCC GCTCCGATGT GCAGGCCTGT TACCACTATG CCGCTGAGTT AGATTGCAGT
GAGTGTTTAA ATGCGGTTTC TGAAAAAGAC TTAGGTGCCA AGGTGGGGCA AAGCGTTGCT
TGGATTAACT ATCGCTACTA TGGTGCGGTG GCGTTATTGC TTATTTTTCT TGGGCCTGTA
GGCGCGGCGC TATATTGCAC TGCCCGTTTT TATGCTGAAG AAAATATACG TAAATCACTC
AATTTACCGC TGATTGAAGA TATTATGTTT GTCCTTGATT GGATCCCGAG CCGGATATTT
TCCTTTGGTT ATGCGCTCAG TGGTCAGTTT AGTGAAGGGC TCTCGGCTTG GCGTGATAAT
GCGTTAAATG TTCATACTAG TGCCAGACAA GTCGTCACTG CAACGGCGTT AGCCTCGCAG
CCTTTACCTG AGGTGTCTAG CGCGCCTGTT TGCGTGCAGT CAACGTTAGC ATTATTAGTG
CTAAGCAAGC GCAACTTTAC TCTGATGGTT GCCGTGCTGT CGCTGCTGAC AATTTTTGGG
TTGGTGAGTT AA
|
|---|
| Protein sequence | MALFSLLVAI LVERLKFLPA AWQCDRVLQS YQSTFFGDKA SLNNTNMLLA LILPAVVVYL
LGWIVSDMFW GLLNLALWVL VAIICFNHQK QRDTFKKYMQ AACRSDVQAC YHYAAELDCS
ECLNAVSEKD LGAKVGQSVA WINYRYYGAV ALLLIFLGPV GAALYCTARF YAEENIRKSL
NLPLIEDIMF VLDWIPSRIF SFGYALSGQF SEGLSAWRDN ALNVHTSARQ VVTATALASQ
PLPEVSSAPV CVQSTLALLV LSKRNFTLMV AVLSLLTIFG LVS
|
|---|
| |