| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_0416 |
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| Symbol | |
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| ID | 1168293 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella oneidensis MR-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004347 |
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| Strand | - |
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| Start bp | 431608 |
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| End bp | 433317 |
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| Gene Length | 1710 bp |
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| Protein Length | 569 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 637342418 |
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| Product | type IV pilus biogenesis protein PilB |
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| Protein accession | NP_716054 |
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| Protein GI | 24372012 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
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| TIGRFAM ID | [TIGR02538] type IV-A pilus assembly ATPase PilB |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCCACCA CAGGCTTACA TTTAGGTTTA TCCACTTTAT TTATTCGTAA AGGGCTGCTA
AATGAAGAGC AGATGGCGAC TGCCATCACC AAATCCCGCC AAAACAAACA AACCTTAGTT
ACCACCTTAG TGCAGACTAA GCTCGTATCG GCCCGCAGTA TTGCCGAGCT TTGCTATGAG
GAATATGGCA CGCCGCTGCT GGATTTAGCC GAATTTGATG TTAGCGCCAT CCCTGAAGAG
TTTCTGAATA AAAAACTGAT TGAAAAACAC CGCTGCTTAC CGCTATTTAA ACGCGGCAAT
CGCCTGTATA TCGCCACCTC CGACCCCACC AATATTGCAG CCCTTGAAGA GTTCCAATTT
AGTGCCGGCC TGCATGCCGA AGCGATTTTG GTGGAGGAGG ATAAGCTCGC CAAAGCCCTT
GAAAAAGTAC TAGAAGAAGA TATTACCGGC CTTGATTTAA GCGGCATGGA TGAGGCGGCG
CTAGCGGGTA TCGAAATTAC CGATACCGAT AAACGCAATG AAGAGACAAC TGGCGAAAGT
AGTGATGATG CGCCAATTGT TATCTATATC AATAAGATAT TAACCGACGC CATTCGCAAG
GGCGCCTCAG ACTTACATTT TGAGCCCTAT GAAAAACGCT ATCGTATCCG TTTTCGTATC
GATGGCATTT TGCATGAAGT CTCCGAACCG CCCATTAGCT TAGCTGGACG ACTCTCGGCG
CGGTTAAAGG TGATGTCAAA GCTCGATATT GCCGAGCGCC GCGTCCCTCA AGATGGCCGG
ATTAAGATGA AGCTGTCCCG CACTAAGTCC ATCGACTTTC GGGTAAGCAC CCTGCCGACC
CTGTGGGGCG AAAAAATTGT AATGCGGATA TTGGACTCGT CCTCCGCCCA ATTAGGCATT
GAAAAACTAG GCTACGAGCC TGATCAAGAA AAACTCTACC TTGAGATGCT GGCCAAACCC
CAAGGGATGA TTCTGGTCAC AGGCCCCACG GGTTCGGGTA AAACCGTTTC GCTCTATACA
GGGTTAAATA TCCTCAATAC CGCCGAGCGT AATATCTCCA CCGCTGAAGA TCCGGTTGAG
ATTAACCTTG AGGGCGTAAA CCAAGTTCAC ATTAATTTAA AGGCCGGTTT AACCTTTGCC
TCGGCACTAC GCTCCTTTTT GCGCCAAGAC CCCGATGTGG TAATGGTGGG CGAAATCCGC
GACCTTGAAA CCGCCGAAAT TGCCATTAAA GCCGCGCAAA CTGGCCACTT AGTATTATCA
ACTCTGCATA CCAACTCCGC CGCCGAAACC TTAACCCGCT TAATCAATAT GGGCGTGCCT
GGCTATAATA TCGCCAGCTC AGTTAACTTA ATTATTGCCC AGCGTTTGGC ACGGCGGCTC
TGCCCCGAAT GTAAACAGCC CGAGCAAATA CCTGATCATG AGTTACAACG TTTAGGCTTT
AGCGATGTGC AAATCGCCCA AGGTTTTACC ACCTATAAAC CCGTGGGCTG CGAGCATTGC
TCCGGTGGCT ATAAAGGACG GGTGGGGATT TACGAAGTGA TGAAGATGTC AGATGAAATT
GCCCGTACTA TTATGGAAGG GGGCAACTCG TTACAGATTG CTGGCCAAGC TAAAGCGCAA
GGCATGCGCG ATCTGCGTCA ATCGGGGCTA CTAAAAGTAC TCCAAGGCGT GACCAGTATT
GCCGAAGTGA ATCGGGTTAC CAGTTTTTAA
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| Protein sequence | MPTTGLHLGL STLFIRKGLL NEEQMATAIT KSRQNKQTLV TTLVQTKLVS ARSIAELCYE
EYGTPLLDLA EFDVSAIPEE FLNKKLIEKH RCLPLFKRGN RLYIATSDPT NIAALEEFQF
SAGLHAEAIL VEEDKLAKAL EKVLEEDITG LDLSGMDEAA LAGIEITDTD KRNEETTGES
SDDAPIVIYI NKILTDAIRK GASDLHFEPY EKRYRIRFRI DGILHEVSEP PISLAGRLSA
RLKVMSKLDI AERRVPQDGR IKMKLSRTKS IDFRVSTLPT LWGEKIVMRI LDSSSAQLGI
EKLGYEPDQE KLYLEMLAKP QGMILVTGPT GSGKTVSLYT GLNILNTAER NISTAEDPVE
INLEGVNQVH INLKAGLTFA SALRSFLRQD PDVVMVGEIR DLETAEIAIK AAQTGHLVLS
TLHTNSAAET LTRLINMGVP GYNIASSVNL IIAQRLARRL CPECKQPEQI PDHELQRLGF
SDVQIAQGFT TYKPVGCEHC SGGYKGRVGI YEVMKMSDEI ARTIMEGGNS LQIAGQAKAQ
GMRDLRQSGL LKVLQGVTSI AEVNRVTSF
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