| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_0372 |
|---|
| Symbol | |
|---|
| ID | 1168249 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella oneidensis MR-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004347 |
|---|
| Strand | + |
|---|
| Start bp | 385042 |
|---|
| End bp | 385746 |
|---|
| Gene Length | 705 bp |
|---|
| Protein Length | 234 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 637342376 |
|---|
| Product | nucleotidase |
|---|
| Protein accession | NP_716012 |
|---|
| Protein GI | 24371970 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1011] Predicted hydrolase (HAD superfamily) |
|---|
| TIGRFAM ID | [TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
[TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E
[TIGR02254] HAD superfamily (subfamily IA) hydrolase, TIGR02254 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGTCCTCAA ACCAAACCTA TTCCTCGGCC ACACCCTATG CTTGGGTGCT TTTCGACGCC
GATGAAACGC TATTTTATTT CGATGCCTTT GAAGGACTAA CCTTGATGTT TGCTGGCTTT
GGTGTTGAGT TTACTCAGGC CGATTTTGAG GAATACCAAA GGGTAAATAA ACCGCTTTGG
GTTGCTTATC AGGATGGCAA TATCAGCGCC GCCGAGCTGC AAACTGTCCG TTTTGAGCCT
TGGTCGGCAA AGCTTAACGT GTCGCCACAA ATCTTAAACA GTGCATTTTT AACTGCCATG
GCTGAGATTT GTGCGCCGCT GCCTGGGGCG CGCGAATTGC TCTCGGCGCT GCATGGTAAG
GCTAAACTGG GGATTATCAC TAATGGCTTT ACTGAGTTGC AGACGGTGCG TTTACAGCGA
ACAGGCTTGC AGCATCATTT TGATATTTTA GTGATTTCAG AAAAAGTCGG CATCGCCAAA
CCCGATGTGG GTATTTTTGA GCATGCGCTT GAGTTAATGG GGCGGCCAGC GCGTGAGCAA
GTATTAATGG TGGGTGATAA CCCGCATTCC GATATCCAAG GTGGTATCAA TGCTGGTATT
CATACTTGCT GGTACAACGT CCATGGCCAT GCTGCGCCTG CGGGGATCAC CCCACATTAT
CAAGTGAGCT CGCACCAAGA GCTGCAGCAG ATACTGGGGC TTTAA
|
|---|
| Protein sequence | MSSNQTYSSA TPYAWVLFDA DETLFYFDAF EGLTLMFAGF GVEFTQADFE EYQRVNKPLW
VAYQDGNISA AELQTVRFEP WSAKLNVSPQ ILNSAFLTAM AEICAPLPGA RELLSALHGK
AKLGIITNGF TELQTVRLQR TGLQHHFDIL VISEKVGIAK PDVGIFEHAL ELMGRPAREQ
VLMVGDNPHS DIQGGINAGI HTCWYNVHGH AAPAGITPHY QVSSHQELQQ ILGL
|
|---|
| |