| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_0314 |
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| Symbol | speF |
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| ID | 1168194 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella oneidensis MR-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004347 |
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| Strand | - |
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| Start bp | 320226 |
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| End bp | 322388 |
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| Gene Length | 2163 bp |
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| Protein Length | 720 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 637342321 |
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| Product | ornithine decarboxylase |
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| Protein accession | NP_715954 |
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| Protein GI | 24371912 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1982] Arginine/lysine/ornithine decarboxylases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAATCAT TAAAAGTTGC CGCAAGCTTA TCTGTTAGAT CTTGTTTTGA TATAGACAGA
GAAGTTGTCA ATGTATTAAC CACTGATTTT TGCGATGTGG GTGCGGCTGT AGTCTCTGTT
GATGATGTTA AAGATGGTAT TGTTGAAAAA ATTAAAAATA CCGGATTAAA ACTGCCTATT
TTCGTATCAG TTTGCTGCGA AGAAACCTTC CCAGATGATA TTTGTTCCTC GATTACCGGG
GTATTTGAAC TCTGCGGTAG CAATACCGAT TTCTATGGTA AGCAGGTCGA AACCGCTATC
AAGAAATATG AGCAAGCTCT ATTACCGCCC TTCTTTGGCA CTCTGAAAAA ATACGTCGAA
ATGGGTAACT CCACCTTTGC CTGCCCAGGC CATCAGGGCG GACAATTCTT TCGTAAACAT
CCCGTAGGTC GCCAATTTTT CGATTTCTTT GGCGAAACCA TTTTCCGCTC CGACATGTGT
AATGCTGACG TAAAACTCGG TGATCTGTTA ATCCACGAAG GTGCACCACT GGATGCACAA
AAATATGCGG CAAAAGTCTT TAACGCCGAT AAAACCTACT TTGTGCTTAA CGGCACTTCC
TCCTCGAATA AAGTCGCCAC CAATGCGCTG CTTGCTAAAG GTGATTTAGT ATTATTCGAC
CGTAATAACC ACAAATCCAA CCACCATGGT GCGTTAATTC AAGCCGGCGC AACACCGATT
TACTTAGAAA CCGCCCGTAA CCCCTTCGGC TTTATTGGCG GTATCGACGC CCACTGCTTC
AAAGAAGCTT ATTTAAGGGA ACAAATTCGC GAAGTTGCAC CAGAACGTGC CGATGAAAAA
CGCCCGTTCC GTTTAGCGAT TATCCAACTC GGCACCTACG ACGGCACCAT CTACAATGCT
CGCCAAGTGG TTGATCGTAT TGGTCATCTA TGTGATTACA TCCTGTTTGA CTCGGCTTGG
GTTGGCTATG AACAGTTTAT TCCTATGATG AATGACTGCT CGCCACTGCT GCTGGAACTG
ACGCCTGAAG ATCCCGGTAT TATCGTGACT CAATCAGTAC ATAAACAGCA GGCAGGTTTC
TCACAAACGT CGCAAATCCA TAAAAAAGAT AAACATATCA AAGGCCAAGC GAGATATTGC
AACCATAAAC GTTTCAACAA TGCCTTTATG ATGCACGCCT CCACCAGCCA CTTCTATCCA
CTGTTTGCCG CATTAGATGT GAACGCTAAG ATGCACGAAG GTGCCAGCGG CCGTTATCTG
TGGCGTGAAG CCGTCAAAGC CGGGATTGAA GCCCGTAAGT TACTGCTTAA AAAATGTAAG
TATATCAAGC CATTTATCCC CAGCATGATC GATGGCCGCC AATGGCAGGA TTACCCAACC
GAGCAAATGG CCGATGATTT GCGCTTCTTT GAATTTGAAC CAGGACAAAA ATGGCACTCA
TTCGAGGGCT ATGAAAAAGG CCAATATTTC GTTGACCCTT GTAAGTTCCT ATTAACCACA
CCAGGTATTG ATGCCGAAAC CGGTAAATAT ACTGAGTTTG GTATTCCAGC GACTATTTTG
GCTAACTTCT TACGTGAAAA TAATATTATT CCCGAGAAGT GCGACTTAAA TTCGATATTA
TTCCTAATGA CACCTGCGGA AGATATGGCA AAAATGCAGC ACTTAGTGTC GCAAATATCC
CGCTTCGAGA AATTAGTCGA TGAAGATGCG CCATTATCGG AAGTATTGCC AAACGTCTAT
AACGCCAATA AAGCCCGTTA TAAAGACTAC ACCATTCGCC AACTCTGCCA AGAAATGCAC
AACCTTTATG TCAGCCATGA CGTAAAACAA CTGCAAAAAG AAATGTTCCG CCATGCTCAC
TTCCCAACCA AGGTGATGGA CCCGCAGGAA GCCAATCTTG AATTTATTCG TGGCAATGTC
GAATTAGTGC CACTGTCGCA AATCGAAGGT CGAATTGCCG CAGAAGGCGC CCTGCCATAT
CCACCAGGGG TGTTATGTAT GGTGCCAGGT GAAATATGGG GTGGCGCAGT ACAACGTTAT
TTCTTAGCTC TCGAAGAAGG CATCAACTTA TTACCCGGAT TCTCCCCTGA ATTACAAGGT
GTTTATCTCG AAAGCACCCC TGACGGAAAA ATCCAAGCCT TAGGTTATGT GTTAAATAAA
TAA
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| Protein sequence | MKSLKVAASL SVRSCFDIDR EVVNVLTTDF CDVGAAVVSV DDVKDGIVEK IKNTGLKLPI
FVSVCCEETF PDDICSSITG VFELCGSNTD FYGKQVETAI KKYEQALLPP FFGTLKKYVE
MGNSTFACPG HQGGQFFRKH PVGRQFFDFF GETIFRSDMC NADVKLGDLL IHEGAPLDAQ
KYAAKVFNAD KTYFVLNGTS SSNKVATNAL LAKGDLVLFD RNNHKSNHHG ALIQAGATPI
YLETARNPFG FIGGIDAHCF KEAYLREQIR EVAPERADEK RPFRLAIIQL GTYDGTIYNA
RQVVDRIGHL CDYILFDSAW VGYEQFIPMM NDCSPLLLEL TPEDPGIIVT QSVHKQQAGF
SQTSQIHKKD KHIKGQARYC NHKRFNNAFM MHASTSHFYP LFAALDVNAK MHEGASGRYL
WREAVKAGIE ARKLLLKKCK YIKPFIPSMI DGRQWQDYPT EQMADDLRFF EFEPGQKWHS
FEGYEKGQYF VDPCKFLLTT PGIDAETGKY TEFGIPATIL ANFLRENNII PEKCDLNSIL
FLMTPAEDMA KMQHLVSQIS RFEKLVDEDA PLSEVLPNVY NANKARYKDY TIRQLCQEMH
NLYVSHDVKQ LQKEMFRHAH FPTKVMDPQE ANLEFIRGNV ELVPLSQIEG RIAAEGALPY
PPGVLCMVPG EIWGGAVQRY FLALEEGINL LPGFSPELQG VYLESTPDGK IQALGYVLNK
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