| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_0293 |
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| Symbol | gph |
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| ID | 1168175 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella oneidensis MR-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004347 |
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| Strand | + |
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| Start bp | 299283 |
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| End bp | 299966 |
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| Gene Length | 684 bp |
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| Protein Length | 227 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 637342302 |
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| Product | phosphoglycolate phosphatase |
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| Protein accession | NP_715933 |
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| Protein GI | 24371891 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0546] Predicted phosphatases |
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| TIGRFAM ID | [TIGR01449] 2-phosphoglycolate phosphatase, prokaryotic
[TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
[TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGCGAGCAC AGATTAAAGC GATTGCCTTT GATCTCGACG GCACGCTGAT TGACAGTGTG
CCTGATCTGG CTGTTGCGAC ACAGGCGGCA CTCGCCGAAT TAGGTTTGGC GACCTGTACC
GAAGCTCAGG TGAGAACCTG GGTGGGTAAT GGGGCTGAGA TGTTAATGCG CCGCGCCATG
AGCCATGCGT TGGGCGCGGA TGTCGAGCAA ACGGCATTGG ATGCCGCCAT GCCGATTTTT
ATGCACCACT ATCAAGAAAA TCTTGAAAAG CACAGCGCAC TCTATGCCGA TGTGCACCAA
GTGCTACAAA CCCTGTTTGA CGCTGGATTT AAGCTGGCAG TGGTGACGAA CAAACCTTAC
CGCTTTACTT TGCCGCTGCT TGAAGCCTTT AAGATTAATG ACTTCTTTAG CTTAGTGCTT
GGCGGTGATT CGCTGGCGAA GATGAAGCCG GATCCATTAC CGCTAGAGCA TTTATTAGCG
CAATGGCAAC TCGATAAAAG TGAGTTGTTG ATGGTGGGCG ATTCTAAAAA TGACATTTTA
GCGGCGAAAG CAGCAGGTGT TGCATCAATC GGCTTGACCT ATGGCTACAA CTACGGTGAA
GATATTGGGC TCACTGGCCC TGACGCAGTA TGCGAGCAGT TTGCCGAGAT CCTTAGCTGG
CTAAATGTCG GCCAGGCAGT TTAA
|
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| Protein sequence | MRAQIKAIAF DLDGTLIDSV PDLAVATQAA LAELGLATCT EAQVRTWVGN GAEMLMRRAM
SHALGADVEQ TALDAAMPIF MHHYQENLEK HSALYADVHQ VLQTLFDAGF KLAVVTNKPY
RFTLPLLEAF KINDFFSLVL GGDSLAKMKP DPLPLEHLLA QWQLDKSELL MVGDSKNDIL
AAKAAGVASI GLTYGYNYGE DIGLTGPDAV CEQFAEILSW LNVGQAV
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