Gene SO_0292 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSO_0292 
Symbolrpe 
ID1168174 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella oneidensis MR-1 
KingdomBacteria 
Replicon accessionNC_004347 
Strand+ 
Start bp298606 
End bp299283 
Gene Length678 bp 
Protein Length225 aa 
Translation table11 
GC content47% 
IMG OID637342301 
Productribulose-phosphate 3-epimerase 
Protein accessionNP_715932 
Protein GI24371890 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0036] Pentose-5-phosphate-3-epimerase 
TIGRFAM ID[TIGR01163] ribulose-phosphate 3-epimerase 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCGTCCAT TTTTAATTGC TCCATCGATT TTATCCGCCG ATTTCGCCCG TTTAGGGGAT 
GACGTTAAAG CCGTGTTAGA TGCAGGGGCT GACGTAGTTC ATTTTGATGT GATGGACAAC 
CACTATGTGC CGAACTTAAC CATTGGCCCT ATGGTGTGCA AAGCCCTACG CGATTATGGC 
ATTACCGCCG ATATCGATGT GCATTTAATG GTTAAGCCTG TTGATCGCAT CGTGCCTGAT 
TTTGCCAAGG CTGGCGCCTC TATTATTACT TTCCATCCCG AGGCCTCTGA GCATATCGAC 
CGTACCTTGC AACTGATTAA AGAATCCGGT TGTAAGGCGG GTTTAGTGTT TAATCCCGCA 
ACACCGCTGC ATTATCTTGA CCACGTGATG GATAAGTTAG ATGTGATCCT GCTGATGTCG 
GTTAACCCTG GTTTTGGTGG TCAATCTTTT ATTCCTTCAA CCTTAGATAA ACTGCGCCAA 
GTGCGTGAGC GTATCGATGC CAGCGGTTTT GATATTCGCT TAGAAGTCGA TGGTGGCGTT 
AAAGTGGATA ACATTGCCGA AATCGCTGCT GCAGGTGCCG ATATGTTTGT GGCAGGTTCT 
GCCATTTTCG GTAAGCCAGA CTATAAAGCC GTGGTAGATG AAATGCGCGT CGAGTTAGCA 
AAAGTTGAGG CCAAATAA
 
Protein sequence
MRPFLIAPSI LSADFARLGD DVKAVLDAGA DVVHFDVMDN HYVPNLTIGP MVCKALRDYG 
ITADIDVHLM VKPVDRIVPD FAKAGASIIT FHPEASEHID RTLQLIKESG CKAGLVFNPA 
TPLHYLDHVM DKLDVILLMS VNPGFGGQSF IPSTLDKLRQ VRERIDASGF DIRLEVDGGV 
KVDNIAEIAA AGADMFVAGS AIFGKPDYKA VVDEMRVELA KVEAK