Gene SO_0283 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSO_0283 
Symbol 
ID1168165 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella oneidensis MR-1 
KingdomBacteria 
Replicon accessionNC_004347 
Strand+ 
Start bp290410 
End bp291030 
Gene Length621 bp 
Protein Length206 aa 
Translation table11 
GC content40% 
IMG OID637342292 
Producttype IV pilus biogenesis protein PilO 
Protein accessionNP_715923 
Protein GI24371881 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG3167] Tfp pilus assembly protein PilO 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAGCTCG ATCTAAGTCA GTTTAACGAT ATCGATTTTG AGAATATTGG CGGTTGGCCA 
AACCAAGTTA AAGTTTTCTT CGCGATTTTG CTTGCGCTTT GCGTATTTGC AGCGGGTTAT 
TTCGTTGTAT TGTCCGATGC TATTGATATA TTCAGTAGCG AGCAAGACAA AGAGCTACAG 
TTAAGAGATG ATTTTAAAAA CAAGTATCAG CTGGCCGCAA ACTTAAAGCT TTATCGTGAA 
CAATTAGCCG TGATGGAAGG GCAATTTGCA GAATTGCTTA AAATGTTACC TTCAGAAAAC 
GAGATGCCAG GATTGCTCGA TGACTTAACT TTCGCAGCAA CTGACGCAGG CTTGCGGATA 
AAAAGTTTAA ATTGGGAAGC GGAAATTGGG CGGGATTTTT ATATTGAATT CCCGATAAAG 
ATGTCTGTCA CTGGTGATTA TCATCAGATT GGCAATATGG TGAGCGGAGT CGCTAAATTA 
CCAAGGATTG TAAGCTTGCA TGATTTTACC ATTAAGCGTG ATGACAGTGG TAATTTAGCC 
ATGGATATCC TTGCGAAGAC TTACCGTTTC AAAGAAGGTG CAGAATTACC TCCTGAAAAG 
CCAAATAAAG GAGGTAAATA A
 
Protein sequence
MKLDLSQFND IDFENIGGWP NQVKVFFAIL LALCVFAAGY FVVLSDAIDI FSSEQDKELQ 
LRDDFKNKYQ LAANLKLYRE QLAVMEGQFA ELLKMLPSEN EMPGLLDDLT FAATDAGLRI 
KSLNWEAEIG RDFYIEFPIK MSVTGDYHQI GNMVSGVAKL PRIVSLHDFT IKRDDSGNLA 
MDILAKTYRF KEGAELPPEK PNKGGK