Gene SO_0268 details

Gene Information

• Locus tag: SO_0268
• Symbol: ccmH
• ID: 1168152
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella oneidensis MR-1
• Kingdom: Bacteria
• Replicon accession: NC_004347
• Strand: +
• Start bp: 268213
• End bp: 268692
• Gene Length: 480 bp
• Protein Length: 159 aa
• Translation table: 11
• GC content: 41%
• IMG OID: 637342276
• Product: cytochrome c-type biogenesis protein CcmH
• Protein accession: NP_715908
• Protein GI: 24371866
• COG category: [O] Posttranslational modification, protein turnover, chaperones
• COG ID: [COG3088] Uncharacterized protein involved in biosynthesis of c-type cytochromes
• TIGRFAM ID: [TIGR03147] cytochrome c nitrite reductase, accessory protein NrfF

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGAACAC TGACAAAAAT CATCGGTGGT TTAGTGTTGT TGCTGAGTAT GGTGACAACC 
GTAATGGCTA CACCTGTAGA CACTTATGAG TTTAAATCGC CTGAAAATCA AAAGCGTGCG 
CTCGAATTGG CGCATTCCTT ACGCTGCCCT CAGTGTCAAA ATCAAAATTT AATTGATTCT 
AATTCACCTG TTGCCAGTGA TTTGCGTCTT GAAGTGTTCA AGATGGTCGA TGAGGGTAAA 
GGTGATGATG AGATCATCGA GTTTATGACC AGCCGTTATG GTGAGTTCGT ACTCTACAAA 
CCTAAAATGG AAACTAAAAC TTACATATTG TGGTTAGGTC CTGTAGGTTT ATTGCTACTA 
GGGTTAATCG TTGGCTTTAT CTTTATTCGT AAGCAACGTA TCACAGGTGC TGCTGGGCTA 
GAGATTAGCG CCGAAGATCA AAAAGCGTTA GATGCCTTAT TGAAGCGTGA CAGTAAATGA 

 

Protein sequence

MRTLTKIIGG LVLLLSMVTT VMATPVDTYE FKSPENQKRA LELAHSLRCP QCQNQNLIDS 
NSPVASDLRL EVFKMVDEGK GDDEIIEFMT SRYGEFVLYK PKMETKTYIL WLGPVGLLLL 
GLIVGFIFIR KQRITGAAGL EISAEDQKAL DALLKRDSK