Gene SO_0266 details

Gene Information

• Locus tag: SO_0266
• Symbol: ccmF-1
• ID: 1168150
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella oneidensis MR-1
• Kingdom: Bacteria
• Replicon accession: NC_004347
• Strand: +
• Start bp: 265671
• End bp: 267650
• Gene Length: 1980 bp
• Protein Length: 659 aa
• Translation table: 11
• GC content: 47%
• IMG OID: 637342274
• Product: cytochrome c-type biogenesis protein CcmF
• Protein accession: NP_715906
• Protein GI: 24371864
• COG category: [O] Posttranslational modification, protein turnover, chaperones
• COG ID: [COG1138] Cytochrome c biogenesis factor
• TIGRFAM ID: [TIGR00353] c-type cytochrome biogenesis protein CcmF; [TIGR03145] cytochrome c nitrate reductase biogenesis protein NrfE

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGATCCCAG AACTTGGACA CTTTTCGCTG ATAATAGGAG TGGCTTTTGC CTTCTTATTA 
ACCAGCGTTC CCCTTATAGG TGTTGCCCGT AAAGACCAAT ATCTAGTGAG GTATGCTTGG 
CCGTTAGCCT ACGGAATGTT CTTTTTTATC GCTTTATCCG TAGTATCACT TGGTTACAGC 
TTCGCCGTTG ATGATTTCTC CGTGGCCTAT GTGGCACATC ACTCTAATTC TCAGTTACCT 
ATCTTCTTTA AGATTGCGGC CGTATGGGGC GGTCATGAAG GGTCGCTGCT ATTCTGGGTG 
TTCGCGCTAT CCACTTGGGC TGCCTCTGTT GCTTTATTCA GTAAAGGCTT AGAAGAAGTC 
TTCACCGCTC GCGTGTTAGC GGTATTGGCA TTGATTGTGA TTGGCTTCAG CTTGTTTATG 
TTACTCACTT CTAGCCCATT TGAACGTATA TTCCCAATGC CTGCTGAAGG CCGCGACTTA 
AATCCAATGC TGCAGGATGT GGGCTTAATC TTCCACCCTC CGATGTTATA TTTGGGTTAT 
GTGGGTTTCT CAGTCAGTTT TGCATTTGCG ATTGCAGCTT TGATGAGTGG TCACCTTGAT 
TCTGCTTGGG CTCGTTGGTC GCGTCCTTGG ACCTTAGCCG CTTGGGTTTT CCTCACTGGT 
GGTATTGCAT TAGGTTCTTG GTGGGCGTAT TACGAATTAG GCTGGGGTGG ATGGTGGTTC 
TGGGATCCAG TAGAAAACGC TTCATTTATG CCTTGGCTAG TGGGTACGGC TTTAGTGCAT 
TCACTGATCG TGACGGAAAA GCGCGGTGCA TTCCGTAACT GGACGGTATT GCTGTCTATC 
TTCGCATTCT CGCTAAGTTT ACTCGGTACC TTTATCGTAC GCTCTGGTGT GTTGACTTCA 
GTGCATTCAT TTGCAGCCGA TCCAAGCCGC GGTATGTTTA TTCTATTATT GCTTGGTCTC 
GCTATCGGTG GTTCGCTCAC TTTGTTTGCC TTCCGTGCAA GTGAAATGAG CAGCCCTGCA 
CGCTTCGAGC TGAAATCAAA AGAAACCATG CTGTTAGTTT GTAACGTGTT ACTGACGGTT 
GCAGCGGGTA CTGTTCTGTT AGGCACTTTA TACCCACTGC TGATCGATGC GTTAGGCATG 
GGTAAGATTT CTGTTGGACC TCCATACTTT AACGCTGTGT TTGTACCCAT AGTACTTGTA 
CTGTTTGCCT TTATGGGCGT CGGTCCAATC ATTCGTTGGA AAAAATCGAA AGCTGGTGAA 
TTGAAGCGAC AGTTACTCGT ACCTGCATTA GTATCTCTGG TGATTGGTAT TGTCACGCCG 
TTTATCGTCG ATGGGGCCTT TAACGCTTGG GTTGCTTGCG GTATCGCCGC TGCAGCTTGG 
ATTATTTTGG CAACCGCAAA AGCAGCTTAC AGCATCGTTA AGCCTAAAGA TGGTGAAGTA 
AGCATCGCAC GTATGGGCCG TAGCCAACTC GGTATGATCA TCGCGCACTT AGGTATTGCT 
GTGTCTGTTA TTGGTGCCAC TATGGTGTCT AACTACTCAG TGGAGAAAAG TGTGCGTATG 
GGGCCTGGCG TAAGCCAAGA GCTAGCGGGT TACACCTTTA AATATCTCGA AACTAAAAAC 
GTTGTTGGTC CTAATTACAC TGCGCAGCAA GGTCAAATTG AGATTTACAA AGGCGATAAG 
TTACTGACAC TGCTCAAACC CGATCGTCGC CAATACAATG TGCGTACTAT GGATATGACC 
GAAGCCGGTA TCGATTGGGG TCTGTTCCGC GATCTGTATG TGACGATGGG CGATCCGATT 
AGTAGTACTG AATTTGCTGT GCGTTTGAAC TACAAGCCGT TTGTGCGTTG GTTATGGTTC 
GGAGCAATAT TCATGATGGT CGGCGGTTTC TTTGCCGCAT CGGATAAACG CTATCGCTCA 
AAAGTCGCGG CTACCGTTAA ACCGCAAGCT GAAAAAGCGA AATTAGCTAC CGCTCAATAA 

 

Protein sequence

MIPELGHFSL IIGVAFAFLL TSVPLIGVAR KDQYLVRYAW PLAYGMFFFI ALSVVSLGYS 
FAVDDFSVAY VAHHSNSQLP IFFKIAAVWG GHEGSLLFWV FALSTWAASV ALFSKGLEEV 
FTARVLAVLA LIVIGFSLFM LLTSSPFERI FPMPAEGRDL NPMLQDVGLI FHPPMLYLGY 
VGFSVSFAFA IAALMSGHLD SAWARWSRPW TLAAWVFLTG GIALGSWWAY YELGWGGWWF 
WDPVENASFM PWLVGTALVH SLIVTEKRGA FRNWTVLLSI FAFSLSLLGT FIVRSGVLTS 
VHSFAADPSR GMFILLLLGL AIGGSLTLFA FRASEMSSPA RFELKSKETM LLVCNVLLTV 
AAGTVLLGTL YPLLIDALGM GKISVGPPYF NAVFVPIVLV LFAFMGVGPI IRWKKSKAGE 
LKRQLLVPAL VSLVIGIVTP FIVDGAFNAW VACGIAAAAW IILATAKAAY SIVKPKDGEV 
SIARMGRSQL GMIIAHLGIA VSVIGATMVS NYSVEKSVRM GPGVSQELAG YTFKYLETKN 
VVGPNYTAQQ GQIEIYKGDK LLTLLKPDRR QYNVRTMDMT EAGIDWGLFR DLYVTMGDPI 
SSTEFAVRLN YKPFVRWLWF GAIFMMVGGF FAASDKRYRS KVAATVKPQA EKAKLATAQ