Gene SO_0248 details

Gene Information

• Locus tag: SO_0248
• Symbol: rpsE
• ID: 1168131
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella oneidensis MR-1
• Kingdom: Bacteria
• Replicon accession: NC_004347
• Strand: +
• Start bp: 253595
• End bp: 254098
• Gene Length: 504 bp
• Protein Length: 167 aa
• Translation table: 11
• GC content: 47%
• IMG OID: 637342255
• Product: 30S ribosomal protein S5
• Protein accession: NP_715888
• Protein GI: 24371846
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0098] Ribosomal protein S5
• TIGRFAM ID: [TIGR01021] ribosomal protein S5, bacterial/organelle type

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCTAAAT TAGAAGCTCA GCAAAAAGAC GATCTGCAAG AGAAATTAAT TGCAGTTAAT 
CGTGTTTCTA AAGTAGTTAA GGGCGGTCGT ATCTTTAGCT TCACAGCACT AACAGTAGTG 
GGTGACGGTA ATGGTAAGGT CGGCTACGGC TATGGTAAAG CGCGCGAAGT TCCAGCAGCA 
ATTCAAAAAG CTATGGAAAA AGCCCGTCGT AATATGGTGA CCGTTGAGTT GAATGCAGGT 
ACTCTGCATC ACCCAGTTAA AGGTCGTCAT ACTGGTTCAC GTGTATACAT GCAACCAGCA 
TCACAGGGTA CCGGTATTAT CGCCGGTGGC GCAATGCGTG CCGTATTGGA AGTTGCAGGC 
GTTCATAACG TTCTGTCTAA AGCATACGGT TCTACTAACC CGATCAACAT CGTTCGCGCG 
ACTGTCGATG CATTGGTGCA CATGAAGTCA CCTTCGCAAA TCGCAGCTAA GCGTGGCCTG 
AATGTTGACG AAATTCGGGG GTAA 

 

Protein sequence

MAKLEAQQKD DLQEKLIAVN RVSKVVKGGR IFSFTALTVV GDGNGKVGYG YGKAREVPAA 
IQKAMEKARR NMVTVELNAG TLHHPVKGRH TGSRVYMQPA SQGTGIIAGG AMRAVLEVAG 
VHNVLSKAYG STNPINIVRA TVDALVHMKS PSQIAAKRGL NVDEIRG