| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_0225 |
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| Symbol | rpoC |
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| ID | 1168108 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella oneidensis MR-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004347 |
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| Strand | + |
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| Start bp | 236488 |
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| End bp | 240705 |
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| Gene Length | 4218 bp |
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| Protein Length | 1405 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 637342232 |
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| Product | DNA-directed RNA polymerase subunit beta' |
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| Protein accession | NP_715865 |
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| Protein GI | 24371823 |
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| COG category | [K] Transcription |
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| COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
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| TIGRFAM ID | [TIGR02386] DNA-directed RNA polymerase, beta' subunit, predominant form |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAAAGACT TATTAAAGTT TCTGAAACAG CAAAGCAAGA CTGAAGAATT TAACGGTATC
AAAATTGGTC TGGCATCGCC TGATCTGATC CGTTCTTGGT CTTTTGGTGA AGTTAAGAAG
CCAGAAACCA TTAACTACCG TACCTTCAAG CCTGAGCGTG AAGGTTTGTT CTGTGCGCGT
ATCTTTGGCC CAGTCAAAGA TTACGAATGT TTGTGCGGTA AGTACAAACG TTTGAAGCAC
CGTGGTGTGA TCTGTGAAAA GTGTGGCGTT GAAGTTACCC AGACTAAAGT ACGTCGTGAG
CGTATGGGTC ACATTGAACT GGCTAGCCCA GTTGCCCACA TTTGGTTCTT GAAATCACTG
CCGTCCCGTA TCGGTTTAAT GCTGGATATG ACGTTGCGTG ATATCGAGCG CGTACTGTAT
TTTGAATCAT TTGTCGTGAT CGAGCCTGGC ATGACCAGCC TTGAACGCGG CCAAATGCTG
ACAGAAGAAA CCTATCTGGA TGCATTAGAA GAGTACGGTG ACGAATTCGA AGCCAAGATG
GGTGCTGAAG CGGTATTAGA ACTGCTACGC GCAATCGATC TCGAAAAAGA AATCGAACAA
ATGCGTGAAG AGCTGCCATC AATCAACTCT GAGACTCGTC GTAAGAAAGT GACCAAGCGT
CTTAAGTTGA TGGAAGCGTT CCACACTTCT GGCAACAAGC CAGAGTGGAT GATCTTAAAA
GTACTGCCTG TGTTACCACC TGACTTACGT CCGCTGGTAC CGCTCGATGG TGGCCGCTTC
GCGACGTCAG ATCTGAACGA TCTGTATCGC CGCGTGATCA ACCGTAACAA CCGTTTGAAG
CGTCTGTTAG ATTTAGCTGC GCCAGACATT ATCGTACGCA ACGAAAAGCG TATGTTACAA
GAGTCTGTTG ATGCGCTATT AGATAACGGT CGTCGTGGTC GTGCTATTAC CGGTTCTAAC
AAACGTCCTC TGAAATCTTT GGCCGATATG ATCAAAGGTA AGCAAGGTCG TTTCCGTCAG
AACTTGTTAG GTAAGCGTGT TGACTATTCA GGTCGTTCGG TAATTACCGT AGGTCCAACT
TTACGTCTGC ACCAATGTGG TCTTCCTAAG AAGATGGCAC TGGAACTGTT CAAGCCATTC
ATCTATGGCA AGCTGGAAGG TCGTGGCTTA GCTACTACCA TCAAAGCGGC TAAGAAGATG
GTTGAGCGTG AAGTGGCGGA AGTTTGGGAC GTTCTGGATG AAGTGATCCG CGAACATCCA
GTGATGCTTA ACCGTGCACC AACACTGCAC AGACTCGGTA TCCAAGCGTT CGAGCCTGTA
CTGATTGAAG GTAAAGCCAT CCAGTTACAC CCACTCGTTT GTGCGGCATA CAACGCCGAC
TTCGACGGTG ACCAAATGGC GGTACACGTA CCGTTAACAC TGGAAGCGCA GCTTGAAGCT
CGTGCTCTGA TGATGTCTAC CAACAACATT CTGTCACCAG CGAACGGCGA GCCTGTAATC
ACTCCGTCTC AAGACGTGGT ATTAGGTCTG TACTACACCA GCCGTGAGCG TATCAATGGC
CGTGGTGAAG GTATGTACTT TATGTCTGTT GCTGAAGTTG AAAAAGCTTA CGCAACGGGC
GCTGCTGAAC TGCATGCCCG CGTGAAAGTG CGCATCACTG AAACCATCAT TGATGAAAAC
GGTGAGCGCA GCGAACAACG CCGTATCGTA GATACTACGG TTGGTCGTGC TCTGCTGTCA
CAAATTCTGC CAGCAGGTTT GTCATTTGAT CTGGTTAACC AGAACATGGG CAAAAAGCAG
ATTTCTAAAC TATTGAACAC TTGTTACCGT CAATTAGGTC TGAAAGATAC GGTTATCTTC
GCTGACCAAC TGATGTACAC CGGTTTCCGT TACGCAACTA TCTCTGGTGC CTCTGTCGGT
ATCGACGACA TGGTGATCCC AGCTGAGAAG TACACCTTAG TGGCTGACGC TGAAGCAGAA
GTGCTCGAAA TTCAAGAGCA GTTCCAATCA GGTCTGGTAA CCGCGGGTGA GCGTTACAAC
AAAGTAATCG ACATCTGGGC AAGTGCGAAC GAAAAAGTTT CTAAGGCGAT GATGGAAAAC
CTGTCAACTG AGACAGTGAT TAACCGTGAT GGCGTTGAAG AAAAACAAGC TTCGTTCAAC
AGCATTTACA TGATGGCCGA CTCGGGCGCT CGTGGTAGTG CCGCACAGAT CCGTCAGTTA
GCGGGTATGC GTGGTCTGAT GGCGAAGCCA GACGGTTCGA TCATCGAAAC CCCAATCGTA
GCGAACTTCC GTGAAGGTCT GAACGTTCTT CAGTACTTCA TTTCAACCCA CGGTGCGCGT
AAAGGTCTAG CCGATACCGC ATTGAAGACA GCGAACTCGG GTTACCTGAC TCGTCGTCTG
GTTGACGTTG CTCAAGACTT AGTGGTCATC GAAGACGATT GTGGTACTCA CGAAGGTCTG
ACAATGAAGC CGCTGATCGA AGGTGGTGAC GTGGTTGAGC CATTACGTGA ACGCGTACTG
GGTCGTGTGG TTGCAGTTGA TGTGTTCTAT CCAGGCACCG AAGACGTTCT TGCTCCACGT
AACACGCTGC TCGATGAGGC ATGGTGTGAC AAGTTAGAAG AGCATTCAAT CGATGAAGTG
ATTGTTCGTT CAGTCATTAC CTGTGATACC GATTTTGGTG TGTGTGCTGC TTGTTACGGT
CGTGACTTGG CCCGTGGTCA TATCATCAAC CACGGTGAAG CGATCGGTGT TGTGGCTGCA
CAATCAATCG GTGAACCTGG TACACAGTTA ACGATGCGTA CGTTCCACAT CGGTGGTGCG
GCGTCACGTG CGTCTGCAGA AAACAACGTT CAAGTGAAGA ACTCTGGTTC GTTGAAACTG
CACAACGCTA AGTACGTAAC AAACACTGAC GGCAAGCTGG TTATCGTTTC TCGTTCTTCT
GAACTGGCAA TCATCGACGA GTTAGGTCGT GAGAAAGAGC GTTATAAAGT GCCTTACGGG
ACTGTGCTCG AGAAGTTAGA AGAAGCATCA GTAGAAGCGG GCGATATTAT CGCTAACTGG
GATCCACATA CTCACCCAAT CATTACTGAA GTGGCGGGTA GCATTAAGTT CGTTGATATG
ATCGACGGTG TGACCATGAC TCGTCAAACA GACGAATTGA CTGGTCTGTC ATCAATCGTA
ATCCTCGACG TAGGTCAACG TGGTTCTGCG GGTAAAGAAA TGCGCCCAAT GATCCGTCTG
GTTGGCGCCG ACGGCAGCGA CCTGATGATC CCAGGTACTG AAGTGCCTGC ACAATACTTC
TTACCAGGCA GTGCGATCGT TAACCTTGAC GACAACGCGC AAATCGCCGT GGGTGACGCG
TTAGCACGTA TTCCACAGGA ATCGTCTAAA ACACGCGACA TCACGGGTGG TCTGCCACGC
GTTGCCGACT TGTTCGAAGC CCGTAAGCCA AAAGAGCCAG CAATTCTGGC GGAAATCTCT
GGTACCATCT CATTTGGTAA AGAGACCAAA GGCAAGCGTC GTTTGGTGAT CACACCAGCG
GATGGCGGCG AACAGTATGA AGAGATGATC CCGAAATGGC GTAACTTAAA CGTGTTCGAA
GGTGAAAAAG TCGAACGTGG CGAAGTTATT GCTGACGGTC CAGAAGCGGC GCATGACATT
CTGCGTCTAC GTGGCATCCA CAACGTAGCA AACTACATTG TGAACGAAGT GCAAGACGTT
TACCGTCTAC AAGGCGTGAA GATCAACGAT AAACATATCG AAGTGATTAT CCGTCAAATG
CTGCGTAAGT GCGTGATCAC TGCTGCTGGT GACAGTGAGT TCTTAGAAGG CGAACAAGTC
GAAGTGTCTC GCGTTAAGAT CGCTAACCGC GAACTTGTCG AACAAGGTAA AGTGCCTGCG
ACCTTTGAAC GTGAACTGCT CGGTATTACC AAAGCGTCTC TGGCAACAGA ATCGTTTATC
TCTGCAGCGT CGTTCCAAGA AACAACTCGC GTACTGACAG AAGCTGCTGT AGGTGGTAAG
TCAGATAACT TACGTGGTCT AAAAGAGAAC GTTATCGTTG GCCGTCTGAT CCCAGCCGGT
ACAGGTTACG CTTATCACAA GACCCGTAAC GATGCCCGTG CTAAGAAAGA CGAGCCAGTT
GTAGTGAATA AGATCACTGC AAGCGAAGCT GAACAAAACC TTGCAGACCT CTTAAACCTG
GCTGGTAGCC AAGATTAA
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| Protein sequence | MKDLLKFLKQ QSKTEEFNGI KIGLASPDLI RSWSFGEVKK PETINYRTFK PEREGLFCAR
IFGPVKDYEC LCGKYKRLKH RGVICEKCGV EVTQTKVRRE RMGHIELASP VAHIWFLKSL
PSRIGLMLDM TLRDIERVLY FESFVVIEPG MTSLERGQML TEETYLDALE EYGDEFEAKM
GAEAVLELLR AIDLEKEIEQ MREELPSINS ETRRKKVTKR LKLMEAFHTS GNKPEWMILK
VLPVLPPDLR PLVPLDGGRF ATSDLNDLYR RVINRNNRLK RLLDLAAPDI IVRNEKRMLQ
ESVDALLDNG RRGRAITGSN KRPLKSLADM IKGKQGRFRQ NLLGKRVDYS GRSVITVGPT
LRLHQCGLPK KMALELFKPF IYGKLEGRGL ATTIKAAKKM VEREVAEVWD VLDEVIREHP
VMLNRAPTLH RLGIQAFEPV LIEGKAIQLH PLVCAAYNAD FDGDQMAVHV PLTLEAQLEA
RALMMSTNNI LSPANGEPVI TPSQDVVLGL YYTSRERING RGEGMYFMSV AEVEKAYATG
AAELHARVKV RITETIIDEN GERSEQRRIV DTTVGRALLS QILPAGLSFD LVNQNMGKKQ
ISKLLNTCYR QLGLKDTVIF ADQLMYTGFR YATISGASVG IDDMVIPAEK YTLVADAEAE
VLEIQEQFQS GLVTAGERYN KVIDIWASAN EKVSKAMMEN LSTETVINRD GVEEKQASFN
SIYMMADSGA RGSAAQIRQL AGMRGLMAKP DGSIIETPIV ANFREGLNVL QYFISTHGAR
KGLADTALKT ANSGYLTRRL VDVAQDLVVI EDDCGTHEGL TMKPLIEGGD VVEPLRERVL
GRVVAVDVFY PGTEDVLAPR NTLLDEAWCD KLEEHSIDEV IVRSVITCDT DFGVCAACYG
RDLARGHIIN HGEAIGVVAA QSIGEPGTQL TMRTFHIGGA ASRASAENNV QVKNSGSLKL
HNAKYVTNTD GKLVIVSRSS ELAIIDELGR EKERYKVPYG TVLEKLEEAS VEAGDIIANW
DPHTHPIITE VAGSIKFVDM IDGVTMTRQT DELTGLSSIV ILDVGQRGSA GKEMRPMIRL
VGADGSDLMI PGTEVPAQYF LPGSAIVNLD DNAQIAVGDA LARIPQESSK TRDITGGLPR
VADLFEARKP KEPAILAEIS GTISFGKETK GKRRLVITPA DGGEQYEEMI PKWRNLNVFE
GEKVERGEVI ADGPEAAHDI LRLRGIHNVA NYIVNEVQDV YRLQGVKIND KHIEVIIRQM
LRKCVITAAG DSEFLEGEQV EVSRVKIANR ELVEQGKVPA TFERELLGIT KASLATESFI
SAASFQETTR VLTEAAVGGK SDNLRGLKEN VIVGRLIPAG TGYAYHKTRN DARAKKDEPV
VVNKITASEA EQNLADLLNL AGSQD
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