| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_0224 |
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| Symbol | rpoB |
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| ID | 1168107 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella oneidensis MR-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004347 |
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| Strand | + |
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| Start bp | 232367 |
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| End bp | 236404 |
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| Gene Length | 4038 bp |
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| Protein Length | 1345 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 637342231 |
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| Product | DNA-directed RNA polymerase subunit beta |
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| Protein accession | NP_715864 |
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| Protein GI | 24371822 |
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| COG category | [K] Transcription |
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| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
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| TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGTTTACT CCTATTCTGA AAAGAAGCGT ATTCGCAAAG ACTTTGGTAA GCGTCCACAG
GTGTTGGATA TTCCTTACCT TTTGTCTATT CAGTTAGACT CTTTTAAGAA GTTCACCGAT
CAAGATCCTA CCGGTGAGCG CGGTCTTGAA GCCGCCTTCC GTAGCGTTTT TCCCATCAAG
AGCTTTTCTG GTAACTCAGA ACTGCAATAC GTCAGCTATA AGCTTGGCGA GCCTGTTTTT
GATGTGAAAG AGTGTCAGAT CCGTGGTGTT ACATATTCAG CTCCACTGCG CGTTAAATTA
CGCATGGTGT TGTATGACCG TGAAGCAGCG GCCGGCACTG TAAAAGATAT TAAAGAACAA
GAAGTCTACA TGGGTGATAT CCCATTGATG ACTGACAACG GTACCTTTGT AATCAACGGT
ACTGAGCGTG TAATCGTTTC TCAATTACAC CGCAGCCCAG GCGTATTCTT CGATCACGAC
CGTGGTAAAA CCCACTCATC AGGTAAGGTA CTGTATAACG CACGTATCAT CCCTTACCGT
GGTTCATGGT TAGACTTTGA ATTCGATCCT AAAGATGCAC TATTCGTACG TATCGACCGT
CGCCGTAAAT TACCAGCGAC CATCATTCTG CGTGCATTAG AGTACTCTAC TCAAGAGATC
CTTGACCTGT TCTTCGAACG TGTTGAGTTC AAGATCAAGA AAGATACTCT GGTTATGACC
TTAGTCCCTG AGCGTCTGCG TGGCGAAACC GCCAGCTACG ACATCAAGGA TGCTGAAGGT
ACTGTATTGG TAGAAGCGGG CCGTCGTGTG ACTGCACGCC ACATTCGCCA ACTTGAAAAA
ACTAACACCA CTGAACTCGA AGTACCAGTT GAGTACATCG TGGGCAAATA TGCTGCTCAA
GATTACATCG ATCCGGATAC AGGTGAAGTA TTGGTTTCTG CTAACAGTGA AATCAGCTTA
GAAGACTTAG CGAAGTTATC ACTAGCAGGC ATCAAAGAGC TGAGCACGTT ATACATTAAC
GAGCTGGATC ACGGTGCTTA CATCTCTGAC ACTCTGCGTA TTGATCCAAC CACTAACCGC
TTAGAAGCGT TAGTTGAGAT CTACCGTATG ATGCGTCCTG GTGAGCCACC AACCAAAGAT
GCAGCAGAAG CACTGTTCCA AAACTTATTC TTCAGTGAAG AACGTTATGA CCTGTCTAAA
GTCGGTCGTA TGAAGTTCAA CCGTCGTCTC AGCATTCCTG ATGACGAAGG TAGCGGTGTA
TTGTCTAAAG AAGACATCGT TGCTGTAATG AAGAACATTA TTCACATCCG TAACGGCTTC
GACGAAGTGG ACGATATCGA CCACTTAGGT AACCGTCGTA TTCGTTCTGT GGGTGAGATG
GCTGAAAACC AATTCCGTGT TGGTCTGGTC CGTGTTGAGC GCGCCGTGCG TGAACGTCTG
TCATTAGGCG ATCTGAACGA GCTGATGCCA CAAGACTTAA TCAACGCTAA GCCAATTTCT
GCTGCAGTGA AAGAGTTCTT CGGTTCTTCT CAGCTGTCAC AATTCATGGA CCAAAACAAC
CCGCTGTCAG AAGTAACGCA TAAGCGTCGT ATTTCTGCTC TTGGCCCAGG TGGTTTGACC
CGTGAACGTG CAGGCTTCGA AGTCCGCGAC GTACATCCAA CGCATTATGG TCGTTTATGT
CCAATTGAGA CCCCTGAAGG TCCAAACATT GGTCTAATCA ACTCATTAGC AAGCTTTGCC
CGTACTAACT CATACGGCTT CTTAGAAACA CCATACCGCA AAGTGGTAGA CGGTGTGATC
ACTGACGAAG TGGAATACTT GTCAGCGATT GAAGAAGGTC GTTATGTAAT TGCACAGGCG
AACATCGAAG TTGACTCTGA AGGCCGCATG GTTGAAGAGC AGATCGCATG TCGTCACAAA
GGTGAATCTA CCTTTATGCG CGCATCTGAC ATTCAATACA TGGACGTATC GCCACAACAG
ATTATTTCTG TTGCTGCGTC TCTGATCCCG TTCTTAGAAC ACGACGACGC GAACCGTGCA
TTGATGGGTG CGAACATGCA ACGTCAAGCG GTACCAACAT TGCGCTCTGA AAAGCCGCTA
GTAGGTACGG GTATTGAACG CACGCTCGCT GTGGATTCTG GCGTAGTTGT TGCCGCCAAA
CGTGGCGGTG TGATCGATTA CGTTGATGCG AGCCGCATCG TCGTTAAAGT AAATGAAGAC
GAGCTGCGCC CAGGCGAAGC GGGTATCGAC ATTTACAACC TGACTAAGTA CACCCGTTCT
AACCAAAACA CGTGTATCAA CCAACGTCCA TGTTGCAGCG TTGGTGAGCC AGTTGTACGT
GGTGACGTGT TAGCAGACGG TCCGTCTACT GACTTAGGTG ACTTAGCCCT TGGCCAGAAC
ATGCGTATCG CGTTCATGCC TTGGAACGGT TACAACTTCG AAGACTCGAT CTTAATTTCT
GAGCGTGTTG CACAGGAAGA CCGTTTCACC ACTATCCACA TTCAAGAGCT GTCTTGTATC
GCTCGTGATA CTAAGCTGGG TAGCGAAGAA ATCACGGCTG ACATTCCAAA CGTAGGTGAA
TCTGCGCTGT CGAAACTCGA CGAGTCAGGT ATCGTTTACA TCGGTGCAGA AGTGAAGGGC
GGCGACATTC TGGTTGGTAA AGTGACGCCA AAAGGCGAAA CACAACTCAC TCCAGAAGAG
AAGTTACTGC GCGCCATCTT CGGTGAGAAA GCGTCTGATG TGAAAGACAG CTCACTGCGT
GTACCTAACT CTGTTAAAGG TACCATCATC GACGTTCAGG TATTTACCCG TGACGGCGTT
GAAAAAGACA AACGCGCCAT TGAAATCGAA GAAATGCACA TTGCCCAAGC TCGTAAAGAC
TTAGGTGAAG AGTTCAAGAT CCTTGAAGAA GGTGTATTGA GCCGTGCACG CAACTTATTA
TTAAGTGCCG GTTTCTCTGA AGCACAAATC GCAGCATTGC CACGTAAAGA TGTATTGGTT
CAAGTCATTG ACGATGAAGC CAAACAAACT GAGCTTGAGC AATTAGCTGA ACAGCATGAA
GAGCTGAAAG CAGACTTCGA TAAGAAGTTT GAAATCAAAC GCCGCAAGAT CACCCAAGGT
GATGACTTGG CACCAGGCGT ACTGAAGATC GTTAAGGTTT ACTTAGCGGT TAAACGTACT
ATCCAACCAG GTGACAAGAT GGCGGGTCGT CACGGTAACA AGGGTGTTAT CTCTAAGATT
AACCCAATTG AAGACATGCC GTACGACGAG CAAGGCAATC CTGTGGACAT CGTGTTGAAC
CCGCTAGGTG TTCCATCACG TATGAACATC GGTCAGGTTC TTGAAGTTCA CTTAGGTGCT
GCGGCTAAAG GTATTGGTCA CAAGATTGCT GCCATGCTGG AAGATCAGCG CGAGAAGGGA
CTTGCTGAAG TACGTAATTA CATCAAACAA GTGTACGAAT TAGGTGACGA AGTGCAGCAG
CGCGTTGACA TCGATTCATT CACTGACGAT GAGTTACTGC GCTTAGCGAA CAACCTGAAA
GGCGGTATCC CAGTTGCTAC ACCAGCCTTC GATGGTGCTA AAGAGAAAGA GATCAAGCAG
ATGCTTGAGC TTGCAGGCTT GCCAACCTCT GGTCAGCTGA AGTTATTTGA TGGTCGTACC
GGTAACGAAT TTGAGCGTCC AGTAACTGTT GGTTACATGT ACATGCTCAA ACTGAACCAC
TTAGTTGACG ACAAGATGCA CGCCCGTTCT ACCGGTTCGT ACAGCTTAGT GACTCAACAA
CCATTGGGCG GTAAAGCTCA GTTCGGTGGT CAGCGTTTCG GGGAGATGGA AGTGTGGGCA
CTCGAAGCAT ACGGTGCCGC TTATACGCTT CAAGAAATGC TCACCGTGAA ATCGGATGAC
GTTAACGGTC GTACACAGAT GTATAAGAAC ATCGTCGACG GTAACCATCA GATGCAGCCT
GGCATGCCAG AGTCCTTCAA CGTATTACTG AAGGAGATCC GTTCACTCGG TATTAATATC
GAGTTGGATC AGGAATAA
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| Protein sequence | MVYSYSEKKR IRKDFGKRPQ VLDIPYLLSI QLDSFKKFTD QDPTGERGLE AAFRSVFPIK
SFSGNSELQY VSYKLGEPVF DVKECQIRGV TYSAPLRVKL RMVLYDREAA AGTVKDIKEQ
EVYMGDIPLM TDNGTFVING TERVIVSQLH RSPGVFFDHD RGKTHSSGKV LYNARIIPYR
GSWLDFEFDP KDALFVRIDR RRKLPATIIL RALEYSTQEI LDLFFERVEF KIKKDTLVMT
LVPERLRGET ASYDIKDAEG TVLVEAGRRV TARHIRQLEK TNTTELEVPV EYIVGKYAAQ
DYIDPDTGEV LVSANSEISL EDLAKLSLAG IKELSTLYIN ELDHGAYISD TLRIDPTTNR
LEALVEIYRM MRPGEPPTKD AAEALFQNLF FSEERYDLSK VGRMKFNRRL SIPDDEGSGV
LSKEDIVAVM KNIIHIRNGF DEVDDIDHLG NRRIRSVGEM AENQFRVGLV RVERAVRERL
SLGDLNELMP QDLINAKPIS AAVKEFFGSS QLSQFMDQNN PLSEVTHKRR ISALGPGGLT
RERAGFEVRD VHPTHYGRLC PIETPEGPNI GLINSLASFA RTNSYGFLET PYRKVVDGVI
TDEVEYLSAI EEGRYVIAQA NIEVDSEGRM VEEQIACRHK GESTFMRASD IQYMDVSPQQ
IISVAASLIP FLEHDDANRA LMGANMQRQA VPTLRSEKPL VGTGIERTLA VDSGVVVAAK
RGGVIDYVDA SRIVVKVNED ELRPGEAGID IYNLTKYTRS NQNTCINQRP CCSVGEPVVR
GDVLADGPST DLGDLALGQN MRIAFMPWNG YNFEDSILIS ERVAQEDRFT TIHIQELSCI
ARDTKLGSEE ITADIPNVGE SALSKLDESG IVYIGAEVKG GDILVGKVTP KGETQLTPEE
KLLRAIFGEK ASDVKDSSLR VPNSVKGTII DVQVFTRDGV EKDKRAIEIE EMHIAQARKD
LGEEFKILEE GVLSRARNLL LSAGFSEAQI AALPRKDVLV QVIDDEAKQT ELEQLAEQHE
ELKADFDKKF EIKRRKITQG DDLAPGVLKI VKVYLAVKRT IQPGDKMAGR HGNKGVISKI
NPIEDMPYDE QGNPVDIVLN PLGVPSRMNI GQVLEVHLGA AAKGIGHKIA AMLEDQREKG
LAEVRNYIKQ VYELGDEVQQ RVDIDSFTDD ELLRLANNLK GGIPVATPAF DGAKEKEIKQ
MLELAGLPTS GQLKLFDGRT GNEFERPVTV GYMYMLKLNH LVDDKMHARS TGSYSLVTQQ
PLGGKAQFGG QRFGEMEVWA LEAYGAAYTL QEMLTVKSDD VNGRTQMYKN IVDGNHQMQP
GMPESFNVLL KEIRSLGINI ELDQE
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