Gene SO_0174 details

Gene Information

• Locus tag: SO_0174
• Symbol: gspL
• ID: 1168061
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella oneidensis MR-1
• Kingdom: Bacteria
• Replicon accession: NC_004347
• Strand: +
• Start bp: 180434
• End bp: 181621
• Gene Length: 1188 bp
• Protein Length: 395 aa
• Translation table: 11
• GC content: 50%
• IMG OID: 637342177
• Product: general secretion pathway protein L
• Protein accession: NP_715816
• Protein GI: 24371774
• COG category: [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG3297] Type II secretory pathway, component PulL
• TIGRFAM ID: [TIGR01709] general secretion pathway protein L

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGAGTGAAC GGCTATTTAT TCGCTTAGGC AGAACCGCAG AGCAGGCTTG TTCTTGGTTG 
GTTTGGTCCG AACAAGAACA AGAAATTATC GCCTCTGGTG AACTGGCCAA TGCCCAAGGT 
TTATCAACCT TAACTGAGCG CGCGGGCAAT CGCCCCATTG ACGTACTGGT GCCAGCTTCC 
GCGATGACGC TCACCAGTGT CAACCTGCCT GAAAAAGGTC AGCGTCAAGC CTTGAAAGCG 
CTGCCTTTTA TGTTGGAAGA ATCCATCGCC GATGATGTAG ATGCGATGCA TTTTACCGTT 
GGACCACGCA ATGGCGATGC CCTCAGCGTA GTGGCCGTCG CCCATGAGCA AATGCAAACT 
TGGCTCAGCT GTTTGGCCGA CGCGGGCTTA AAAGTGAAGC GTATCGTGCC CGATTGCCTA 
GCCTTGCCAT TGCAGGAATG CCAATGGGCG GCAATGCGTT TTGGCAATGA GTTATTGCTG 
CGAACGGGTT TAGGAACGGG CCACAGTTTA CCCTTACCTT GGTTGCCAGT GGCGATGAAG 
CAACTGACAG CCCAAGCTGA GGAGCTGTCG GTCGCCAGTT ATAGTGAGAT GCAATTAGAC 
GGCGTTGAGC TTAAGCCGCA GCCGCTGGAT TTACCTATGT TGGTGCTGGC GCGCGGCATT 
TTACATGCGC CGATCAACTT ACTCTCTGGG GTTTATACGC CTAAGCGTGA GTACAGTAAG 
CACTTGTTGC AATGGAAGAA TGCGGCCATT GTATTAGCCG TTGCCATTGT GTTGTCGCTC 
GTGAATAAAG GCTTAACCAT TCATCAAGTC AATGGCCAAA TCGCCGATCT TAAAGCGCAG 
AGTGAAGCCA TTTATCAGCA AGTGGTGCCG GGTAATACAC GTATTGTGAA TTTACGCTCG 
CAGATGGAGA GCCAACTACG GTCGCTCCAA GGCCAAGGCA GTGGTGCTGA GTTTTTTTCT 
ATGCTTGCAG GTTTGCAAGA CGCCTTTAAA CAAGTGCCAG AGCTAAAGCC CAATAGCTTA 
CGATTTGAGA GCGCCCGTAA TGAAATCCGT ATGCAGGTCA CGGCTAAAAA TTACGCGCAA 
ATTGAGAAGT TTAAAGAAAT TGTTGGTCGT CGTTTCCAAA TGGATGGCGG CACAATGAAT 
AGCGGTGAAG ATCAGGTCAC CAGTACCTTA ACCTTGAGGA GCAAATAA 

 

Protein sequence

MSERLFIRLG RTAEQACSWL VWSEQEQEII ASGELANAQG LSTLTERAGN RPIDVLVPAS 
AMTLTSVNLP EKGQRQALKA LPFMLEESIA DDVDAMHFTV GPRNGDALSV VAVAHEQMQT 
WLSCLADAGL KVKRIVPDCL ALPLQECQWA AMRFGNELLL RTGLGTGHSL PLPWLPVAMK 
QLTAQAEELS VASYSEMQLD GVELKPQPLD LPMLVLARGI LHAPINLLSG VYTPKREYSK 
HLLQWKNAAI VLAVAIVLSL VNKGLTIHQV NGQIADLKAQ SEAIYQQVVP GNTRIVNLRS 
QMESQLRSLQ GQGSGAEFFS MLAGLQDAFK QVPELKPNSL RFESARNEIR MQVTAKNYAQ 
IEKFKEIVGR RFQMDGGTMN SGEDQVTSTL TLRSK