Gene SO_0171 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSO_0171 
SymbolgspI 
ID1168058 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella oneidensis MR-1 
KingdomBacteria 
Replicon accessionNC_004347 
Strand+ 
Start bp178274 
End bp178642 
Gene Length369 bp 
Protein Length122 aa 
Translation table11 
GC content47% 
IMG OID637342174 
Productgeneral secretion pathway protein I 
Protein accessionNP_715813 
Protein GI24371771 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG2165] Type II secretory pathway, pseudopilin PulG 
TIGRFAM ID[TIGR01707] general secretion pathway protein I
[TIGR02532] prepilin-type N-terminal cleavage/methylation domain 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAATACG CTAGGGGAAT GACGTTACTC GAAGTGATCG TGGCGTTAGC TGTGTTTGCT 
GTTGCCGCCG TTTCCATCAC TAAAAGCTTG AGTGAGCAAA TGGCGAATAT GCCGATTCTG 
GAGTCGCGCA CTCTGGCCCA GTGGGTAGCA GACAATCAAA TGGTCGATGC TAGGCTTGAT 
CCTCAATTTC CGGAAATCGG CAAAAAAGAA GGTCAAGTAG AACTGGCGGG TAAGGATTGG 
TACTGGCGTA AAGAGGTGGT GAAAACCACA GACGATAACT TTCGGATGAT CCGCATTAGT 
GTCAGCGAAG ATGAGCGTTA TCAGCGTATT GCTGCACAAG TGAGTAGTTA TGTCCTCAAA 
ACGAACTAA
 
Protein sequence
MKYARGMTLL EVIVALAVFA VAAVSITKSL SEQMANMPIL ESRTLAQWVA DNQMVDARLD 
PQFPEIGKKE GQVELAGKDW YWRKEVVKTT DDNFRMIRIS VSEDERYQRI AAQVSSYVLK 
TN