Gene SO_0170 details

Gene Information

• Locus tag: SO_0170
• Symbol: gspH
• ID: 1168057
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella oneidensis MR-1
• Kingdom: Bacteria
• Replicon accession: NC_004347
• Strand: +
• Start bp: 177715
• End bp: 178287
• Gene Length: 573 bp
• Protein Length: 190 aa
• Translation table: 11
• GC content: 47%
• IMG OID: 637342173
• Product: general secretion pathway protein H
• Protein accession: NP_715812
• Protein GI: 24371770
• COG category: [N] Cell motility; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG2165] Type II secretory pathway, pseudopilin PulG
• TIGRFAM ID: [TIGR01708] general secretion pathway protein H; [TIGR02532] prepilin-type N-terminal cleavage/methylation domain

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTTAATGC TGCGCCACGC CGGCTTCACC TTAATGGAGG TGATGCTGGT GATTTTGTTA 
ATGGGACTCA CCGCTGCTGG GGTGACTATG TCTATTGGCA ATTCAGGGCC ACAACAGGCG 
CTGGAAAAGA CTGCGCAGCA ATTTATTGCC GCCACAGAGT TAGTGCTCGA TGAAACCGTA 
TTAAGCGGCC AATTTATCGG AATCGTGGTG GAAAAAACAA GCTATCAGTT TGTTTTTTAT 
AAGGATGGTA AATGGAATCC ATTGGAGAAG GACAGAATTT TGTCCGAGAA ACAAATGGAA 
CCCGGTGTCG TCATCAATTT AGTGCTCGAT GGTTTGCCAC TCGTTCAAGA GGACGAGCAA 
GACGAATCTT GGTTTGAAGA ACCCTTAATC GAGCCCTCAA GCGAAGATAA GAAAAAGCAC 
CCAGAGCCAC AGATTTTGCT GTTCCCAAGC GGTGAAATGA GCGCTTTTGA GCTGAGTTTT 
ATCACTAAGA CAGATAAAGG GCCGCTCGAC GTATTAGTCG TGGGTGATGC CCTTGGCCGT 
TTAACCCTAG GGCGACCCGA TGAAATACGC TAG 

 

Protein sequence

MLMLRHAGFT LMEVMLVILL MGLTAAGVTM SIGNSGPQQA LEKTAQQFIA ATELVLDETV 
LSGQFIGIVV EKTSYQFVFY KDGKWNPLEK DRILSEKQME PGVVINLVLD GLPLVQEDEQ 
DESWFEEPLI EPSSEDKKKH PEPQILLFPS GEMSAFELSF ITKTDKGPLD VLVVGDALGR 
LTLGRPDEIR