| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_0167 |
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| Symbol | gspE |
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| ID | 1168054 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella oneidensis MR-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004347 |
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| Strand | + |
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| Start bp | 174412 |
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| End bp | 175977 |
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| Gene Length | 1566 bp |
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| Protein Length | 521 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 637342170 |
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| Product | general secretion pathway protein E |
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| Protein accession | NP_715809 |
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| Protein GI | 24371767 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
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| TIGRFAM ID | [TIGR02533] general secretory pathway protein E |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTGAAA TACAAGTATC CCAAGTCGAG GATTTAAGCT TAGTTTCCAA TGAACTAGGT
CTTGAAGCCG AAGGTGATGA GGTATTTCGC TCCAGCAGCA AAGAGCGTTT ACCTTTTGCC
TTTGCCCATC GCCATCAGGT GATTTTAGCC TATGGCGATG ATGGTGCCTT GAACCTGTTT
TATACCGCCC ACACCCCATT AGCGGCTATG CTCGAGGCAC GCCGCTATTC AGGGGTGGAT
TTACCTTTGG TGTTGCTCGA GCCGAATAAG TTTGAGGTCA AACTCACTCA GGCATACCAA
GCTAATTCCT CCGAAGCACA ACAGCTGATG GAAGATATTG GCAACGAGAT GGATTTATTC
ACCCTCGCTG AAGAGTTGCC ACAAACCGAG GACCTGCTCG AAGGTGACGA TGATGCCCCG
ATCATTAAGC TGATTAACGC CTTGTTATCT GAGGCGATTA AAGAAGAAGC CTCGGATATT
CATATCGAAA CCTATGAGAA ACAACTGGTG GTGCGATTCC GCATCGACGG TGTGCTCAAA
GAAGTGCTCA AGCCAAACCG TAAACTGTCA TCTTTATTGG TGTCGCGGAT TAAGGTTATG
GCGCGCCTCG ATATCGCCGA GAAGCGTGTT CCCCAGGACG GCCGTATTTC GCTGCGGATT
GCGGGCCGCG CGGTGGACGT GCGGGTATCG ACCATGCCAT CGAGCCACGG TGAACGGGTG
GTGCTGCGTT TACTCGATAA AAACGCCGGT AATCTGGATT TAAAACAACT GGGTATGACG
GACAGTATCC GAGCCAAGTT CGATGAGCTT ATTCGTCGTC CCCACGGTAT TATCTTGGTA
ACCGGTCCTA CGGGTTCGGG TAAGAGTACC ACGCTGTATG CCGGGCTTAC TGAGATTAAC
TCTAAAGATA CCAATATCTT AACTGTTGAA GATCCCATCG AATACGAGTT AGAAGGCATC
GGCCAAACTC AAGTTAACAC TAAGGCGGAT ATGACCTTTG CCCGTGGTCT ACGGGCGATT
TTGCGTCAAG ACCCCGATGT GGTGATGATT GGGGAAATCC GTGACCTTGA AACTGCGCAA
ATTGCGGTGC AGGCATCTTT GACTGGCCAC TTAGTGATTT CGACTCTTCA CACTAACACC
GCTTCGGGCG CGATTACCCG TTTGCAGGAC ATGGGTGTTG AGCCATTTTT GGTGTCATCG
AGCTTGCTCG GCGTATTGGC CCAGCGTTTA ATCCGTACCC TCTGTCCAAA ATGTAAGACA
GAGCATACGC CCGATGAACG TGAACGTGAG CTACTTGGGA TTACTGCTGA TGATCCACGC
CATATTTATC GTGCCAACGG CTGTAAAGCC TGTGGCGGTA GTGGTTACCG TGGTCGTACC
GGCATCCACG AGCTATTGCT TGTCGATGAT AATGTGCGCG AGCTTATTCA CGGTGGCCGT
GGCGAACTGG CGATTGAGAA ATATATCCGT CAGTCGGTAC CGAGTATTCG CCATGATGGC
ATGAGTAAAG TGCTTTTAGG TATCACTACT CTGGAAGAAG TCTTGAGGGT GACCCGCGAG
GAGTAA
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| Protein sequence | MSEIQVSQVE DLSLVSNELG LEAEGDEVFR SSSKERLPFA FAHRHQVILA YGDDGALNLF
YTAHTPLAAM LEARRYSGVD LPLVLLEPNK FEVKLTQAYQ ANSSEAQQLM EDIGNEMDLF
TLAEELPQTE DLLEGDDDAP IIKLINALLS EAIKEEASDI HIETYEKQLV VRFRIDGVLK
EVLKPNRKLS SLLVSRIKVM ARLDIAEKRV PQDGRISLRI AGRAVDVRVS TMPSSHGERV
VLRLLDKNAG NLDLKQLGMT DSIRAKFDEL IRRPHGIILV TGPTGSGKST TLYAGLTEIN
SKDTNILTVE DPIEYELEGI GQTQVNTKAD MTFARGLRAI LRQDPDVVMI GEIRDLETAQ
IAVQASLTGH LVISTLHTNT ASGAITRLQD MGVEPFLVSS SLLGVLAQRL IRTLCPKCKT
EHTPDERERE LLGITADDPR HIYRANGCKA CGGSGYRGRT GIHELLLVDD NVRELIHGGR
GELAIEKYIR QSVPSIRHDG MSKVLLGITT LEEVLRVTRE E
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