| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_0166 |
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| Symbol | gspD |
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| ID | 1168053 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella oneidensis MR-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004347 |
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| Strand | + |
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| Start bp | 172301 |
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| End bp | 174415 |
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| Gene Length | 2115 bp |
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| Protein Length | 704 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 637342169 |
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| Product | general secretion pathway protein D |
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| Protein accession | NP_715808 |
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| Protein GI | 24371766 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1450] Type II secretory pathway, component PulD |
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| TIGRFAM ID | [TIGR02517] general secretion pathway protein D |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATAACA AACGGATTCG ACGCAAACTG ATTGCTGGAG TTGTGGCGGG CGCCACCATG
CTGACCTCGC AATTTGTTTG GTCTGAACAA TATGCGGCCA ACTTTAAGGG CACAGATATT
CAAGAATTTA TCAATATTGT TGGTAAAAAT CTGAATAAAA CCATTATCGT TGACCCAACA
ATTCGCGGCA AGATCAACGT TCGCAGCTAT GATCTACTCA ATGATGAGCA ATACTATCAA
TTTTTCCTCA ACGTGCTGCA AGTGTACGGT TATGCCATCG TCGAGATGGA AAATAACGTT
ATCAAAGTCA TCAAAGATAA AGATGCGAAA ACGGCAGCGA TTCGTGTTGC CAATGACAAT
GACCCAGGTC TGGGTGATGA AATGGTTACC CGTATCGTGG CGCTGTATAA CACAGAGGCT
AAGCAATTAG CGCCGTTATT ACGTCAGTTA AACGATAACG CTGGTGGTGG AAACGTTGTT
AACTACGACC CTTCAAACGT GCTGATGCTG TCTGGTCGCG CTGCGGTCGT AAACAAGCTA
GTGGAAATCA TTCGCCGAGT CGATAAACAG GGTGATACCT CTGTACAAGT AGTGCCGCTC
GAATATGCCT CTGCCGGTGA AATGGTACGA ATTATCGATA CTCTGTACCG CGCAACCGCT
AACCAATCGC AGCTTCCAGG TCAAGCGCCC AAAGTGGTGG CCGATGAGCG GATTAACGCT
GTCGTCGTGA GTGGTGACGA AAAGAGCCGC CAACGTGTGG TTGAGTTGAT CCACCGTCTC
GATGCTGAAC AAGCCAGCAC GGGTAACACT AAGGTACGTT ATTTACGTTA TGCCAAGGCC
GAAGACTTAG TTGAAGTGTT AACTGGCTTT GCGCAGAAGC TCGAAAGCGA AAAAGATCCG
AGCGCTCAAG CTGCAGGTGG TGGTAAACGT CGTAATGAAA TTAATATTAT GGCCCACACC
GACACTAACG CATTAGTGAT CAGTGCTGAG CCGGACCAAA TGCGCACCAT TGAGAGCGTC
ATCAACCAAC TCGATATTCG TCGTGCTCAG GTACTCGTAG AAGCCATTAT CGTGGAAGTC
GCCGAAGGCG ATAACGTGGG CTTTGGTGTG CAATGGGCCG CCAAAGCTGG TGGTGGTACT
CAGTTTAATA ACTTAGGCCC AACTATTGGT GAAATTGGCG CGGGTATTTG GCAGGCGCAG
GATAAAGAAG GTACTTACAT TACGAACCCG AGCACGGGTG AGGTGATTGG CCAAAACCCC
AAAACCAAGG GTGATGTGAC CTTATTGGCG CAGGCCTTAG GTAAAGTGAA TGGTATGGCA
TGGGGCGTTG CCATGGGTGA CTTTGGTGCC TTAGTACAAG CGGTCTCCGC CGATACCAAC
TCAAACGTAC TGGCAACGCC TTCGATTACC ACCTTAGATA ACCAAGAAGC TTCCTTCATC
GTCGGTGACG AAGTGCCCAT TCTGACGGGT TCTACCGCCA GTTCAAACAA CAGTAACCCA
TTCCAAACCG TTGAGCGTAA AGAGGTTGGG GTGAAGTTAA AAGTGGTGCC ACAGATTAAC
GAAGGCAACG CGGTTAAACT CGCCATTGAG CAGGAAGTCT CCGGCGTAAA CGGTAACACT
GGGGTGGATA TTTCCTTCGC GACACGCCGG TTAACTACCA CTGTTATGGC CGATTCAGGC
CAAATCGTGG TACTCGGTGG TTTGATTAAC GAAGAAGTCC AAGAAAGTAT CCAGAAAGTG
CCATTCCTTG GTGATATTCC GATACTCGGA CACTTATTCA AATCCTCTTC TAGCAAGAAG
ACCAAGAAAA ACCTGATGAT CTTCATCAAG CCCACCATCA TCCGTGATGG TGTGACGATG
GAAGGTATCG CGGGTCGCAA ATATAACTAT TTCAGAGCGT TGCAGCTTGA ACAGCAAGAG
CGTGGTGTCA ATTTAATGCC TGATACTAAA GTGCCGGTAT TAGATGAGTG GAACCAGTCT
GAGTACTTGC CACCTGAAGT GAACGATATT TTAGAGCGTT ACAAAGAAGG CAAAGGGTTA
GAGACTCAGA TGCGTAAAAC TGACCCGACC CTCAAGTCGT TGGATGAAAA CAAAAACAAA
GATAAAACAC AATGA
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| Protein sequence | MNNKRIRRKL IAGVVAGATM LTSQFVWSEQ YAANFKGTDI QEFINIVGKN LNKTIIVDPT
IRGKINVRSY DLLNDEQYYQ FFLNVLQVYG YAIVEMENNV IKVIKDKDAK TAAIRVANDN
DPGLGDEMVT RIVALYNTEA KQLAPLLRQL NDNAGGGNVV NYDPSNVLML SGRAAVVNKL
VEIIRRVDKQ GDTSVQVVPL EYASAGEMVR IIDTLYRATA NQSQLPGQAP KVVADERINA
VVVSGDEKSR QRVVELIHRL DAEQASTGNT KVRYLRYAKA EDLVEVLTGF AQKLESEKDP
SAQAAGGGKR RNEINIMAHT DTNALVISAE PDQMRTIESV INQLDIRRAQ VLVEAIIVEV
AEGDNVGFGV QWAAKAGGGT QFNNLGPTIG EIGAGIWQAQ DKEGTYITNP STGEVIGQNP
KTKGDVTLLA QALGKVNGMA WGVAMGDFGA LVQAVSADTN SNVLATPSIT TLDNQEASFI
VGDEVPILTG STASSNNSNP FQTVERKEVG VKLKVVPQIN EGNAVKLAIE QEVSGVNGNT
GVDISFATRR LTTTVMADSG QIVVLGGLIN EEVQESIQKV PFLGDIPILG HLFKSSSSKK
TKKNLMIFIK PTIIRDGVTM EGIAGRKYNY FRALQLEQQE RGVNLMPDTK VPVLDEWNQS
EYLPPEVNDI LERYKEGKGL ETQMRKTDPT LKSLDENKNK DKTQ
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