| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_0141 |
|---|
| Symbol | |
|---|
| ID | 1168035 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella oneidensis MR-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004347 |
|---|
| Strand | - |
|---|
| Start bp | 146606 |
|---|
| End bp | 149839 |
|---|
| Gene Length | 3234 bp |
|---|
| Protein Length | 1077 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 637342151 |
|---|
| Product | sensory box protein |
|---|
| Protein accession | NP_715783 |
|---|
| Protein GI | 24371741 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCATCCA CGCTACAGCA TCTCAGCCTG AAACAGAAAC TGATTCTGTT TTCGCTGCTA
CCTTTGCTGA TGATGAGTAT TTTTGTGCTG TCGCGAATGT ATATGCTTGT GAAGGAATAC
CGGTTTGCCA ATCAGAATCA TTTAGCGATA AGGGCAACGG TACAAACGAC AGACTTCCTG
TTTCAACTCC ATAATGAGTA CGGACTCAGT ACCCAATTAC TCCCAGCCAC TACGCCTCAA
GATGAAACTC GCCTACTGCA ACAGCAACAA ATTACTTCGG CTGCACTAGA GGCACTGCTT
AAGAGCCCTG CTTTAATTGA ATTGAACGCC ACCTTAAGTG ACCAACAAGC ATCGACACAA
TTACAGGAAA AACTCACCAA CTTGACGCTG CTAAGCCATA AGTTAGCATC CAGTCGCCAA
GAGGCACTCG ACCAGCATCC ATCTTCATTT ATTGTTTTAT ATCAGCAGTT TAACTCTTCA
TTATTACAGT TGGTCCAACA GCTACAATTA CTCACTAATG ACATAACACA ATCAAGGGCC
TATGCGGATT TACTCAATTT ATTGATGGTG CAAGAGCTAG CGGTTAAGGA GCGCAGCGCG
ATTAATCGTA TGTTGTTGTC AGATAGCCTC AGCATTAATG ACTATAAAGC CATCAACACA
ATTATGTACG AGTATGGCCA AGCTATTTCC CATGCGAGTA ATGCCTCAAT ATCTGACAGA
CACTCCCTTA TCCGCCAAAT ACAAGCCTCA CCTGAAAGCC TACGAATACT GAAAATCAGC
CAGCAAATCG AGCAACAAAT CCATATCAGT ACCTTAGTGC AAAGTATCAA TGCGCATTTA
GGTTATGAGG GGTTAATCGA TAGTTTTCAG GATTACTTAT TAACGGGCAG CCCAGCATCG
CTTGCAAAGT TCACTAAAGC CTTAACCACG ATCCAGCAAA AACTCGATGA ACTTAACCGC
GAAACGGTAA ACCTTCCCTC ACTTGCGCCT GCCGTACAAA GCATCGAAGA GAGCATCAAC
CAGTATCAAT TCTGCATGTC TAAGATAGTG CAGTTAAAAG ATCAAAAGCT GTCGCTCGCA
GAAATCACCG CCCTTGCCCA TATCAACAAT AGCGAGCTCT CTGCCGCCAT TGATAAATTA
TTGATGCCAC CCCATCCAGT AAGCAGCAAA CATTGGTGGA CATTAACGAC GGATAGAATC
AATAAACTGA ATGCACTCAG TAATGAAATC ACCCTCTCCA TGGCTCGCCA GAGTGATATA
CAACAACATC ATGCGCTCAT GTTATTAGGC ATTTATCTGC TGTCTGCCTT ATTTACCGCC
ACGATCACCC TGTGGCTGGG CCGCAAAATC ATTCGCAGTT TTATGTTTAA AATCACCCAA
ATTGCCAATG ATATGCAGCA AATGGCCGCC GATCCTCAGC TAAATATCCA TATTGATGTG
TCAGGCTCCG ATGAACTGGC TCGCATGTCT CGGGCAATGA ACCGCATGCT GAGTGAGCGC
CAAAAAGCCA ATCAGGCCCT TAGCCGCGCC GCAGCGGTAT TTAACTATTC GGCCGAAGGC
ATTATGGTCA CAGATGCCGA TAATCATATC GAGTTAGTGA ACCCCGCCTT TAGCCAGATC
ACAGGCTACA GCCTTGAAGA CGTCAAAGGT CGCAGCCCCT CGATGTTGAG TTCTAAACGC
CACCCAAGCC ATTTCTACAC TGCCATGTGG GAAGCGCTGC AAAAAGACAG CAAATGGGAA
GGCGAGATCT GGAATAAACG CAAAGATGGC CAAGTGTATC CCGAGTATTT GGCCATTACC
GTGGTGCGTA ATGAACGGGG TGAAATCATC CAGCATATTG GTTTGTTTAT GGATATTAGT
AAACGTAAGC AATATGAGCA GGATCTTTGG TATCAGGCAC ATTTCGATAC GCTGACAGGC
TTACCTAATC GCAAATTGTT TAATGAGCGA CTCCAACATG AAATCCAGCT CGCCCAACAT
GACTCCCGCA AACTGGCGAT TCTGCTGATT GATTTAGACC AATTTAAGTA TATTAATGAC
GTCCAAGGCC ACGCCACAGG CGACTTACTA CTGCAAGACG TGGCTAAGCG ACTAGAAAAT
ATTGCCGGAA AGAATGATTT GATCGCACGC ATCGGTGGGG ATGAATTTGT ACTTATCCTT
CCCCGAGTCA CCAATGAGTT CGCGATTGAG CATATGGCAA GCCGTATCAT CGAAACCCTG
TCGACGCCCT TTAACTTGAA TGAACGGGAA ATCCAAATTT CCGCCAGCTT TGGGATTGGT
GTTTACCCAG AAGACGGCCT GGATGTTAGC TCGCTAACCC GCAATACCGA AATGGCCATG
TATCAGGCAA AAGATGCCGG ACGCAATAAC TTCAAATACT TCACCTCGGG AATGAACCAA
GCCATGTTTG CCCGCATGGA GCTGGAACAG CGGCTACGCC GCGCCGTGGC GCAGGATGAA
TTTACGCTAC ACTATCAACC CATTGTGGAA ATGAAGACGG GTAAAGTCTG TAGTGTTGAA
GCGCTTATTC GTTGGCAAGA CCCCGATTTA GGCTTAATCC CGCCGGATCA GTTTATAGGC
ATCGCGGAGG AAACAGGGCT TATTGAACCC ATGGGTGAAT GGGTACTCAA CCAAGCGATG
CACGACCTAA GACAATGGCA ACAACTTGGC TTACAGCTTA ATGTGGCGAT CAATGTCTCG
AGCCGCCAAT GTGTGAATGC GCGAGGTATG GGATTTGATC AGGTACTGCA GGAATGCTTT
AACCGTCATC ATATCAACCC AAGAAACGTG CATATTGAGA TCACCGAAAG CATGCTAATG
GGCGATGCCA GCCACTGCTT AAGCACCTTA GAAGCCATTC GCCGTTTAGG CTCGCAGATT
TATATCGACG ACTTTGGCAC AGGCTATTCT TCATTGAGTT ATTTGAAGAA ATTCCCTATC
TCTGTGATAA AAATCGATCG TAGCTTTGTG GAAAATGCCC TGAGCAACAA CTCAAATACC
AATTTGGTGA AAGCCATTGT GATGATGGGG CAAAGCCTTG AAATGGAACT GGTGGCCGAA
GGAATTGAAA CCGAAGCCCA ATGGAATTTA CTGCGCGACT TAGGTTGCCA CTACGCCCAA
GGGTATTTGA TCTCAAAACC GTTGCCATTC GCAGCCATTA CCCCACTGCT AAGCCAAACA
CTACCGAGAC TATTGCAGCC ACAAGCGCCA CGCGAAAAGT GTGTTAATGC TTAG
|
|---|
| Protein sequence | MPSTLQHLSL KQKLILFSLL PLLMMSIFVL SRMYMLVKEY RFANQNHLAI RATVQTTDFL
FQLHNEYGLS TQLLPATTPQ DETRLLQQQQ ITSAALEALL KSPALIELNA TLSDQQASTQ
LQEKLTNLTL LSHKLASSRQ EALDQHPSSF IVLYQQFNSS LLQLVQQLQL LTNDITQSRA
YADLLNLLMV QELAVKERSA INRMLLSDSL SINDYKAINT IMYEYGQAIS HASNASISDR
HSLIRQIQAS PESLRILKIS QQIEQQIHIS TLVQSINAHL GYEGLIDSFQ DYLLTGSPAS
LAKFTKALTT IQQKLDELNR ETVNLPSLAP AVQSIEESIN QYQFCMSKIV QLKDQKLSLA
EITALAHINN SELSAAIDKL LMPPHPVSSK HWWTLTTDRI NKLNALSNEI TLSMARQSDI
QQHHALMLLG IYLLSALFTA TITLWLGRKI IRSFMFKITQ IANDMQQMAA DPQLNIHIDV
SGSDELARMS RAMNRMLSER QKANQALSRA AAVFNYSAEG IMVTDADNHI ELVNPAFSQI
TGYSLEDVKG RSPSMLSSKR HPSHFYTAMW EALQKDSKWE GEIWNKRKDG QVYPEYLAIT
VVRNERGEII QHIGLFMDIS KRKQYEQDLW YQAHFDTLTG LPNRKLFNER LQHEIQLAQH
DSRKLAILLI DLDQFKYIND VQGHATGDLL LQDVAKRLEN IAGKNDLIAR IGGDEFVLIL
PRVTNEFAIE HMASRIIETL STPFNLNERE IQISASFGIG VYPEDGLDVS SLTRNTEMAM
YQAKDAGRNN FKYFTSGMNQ AMFARMELEQ RLRRAVAQDE FTLHYQPIVE MKTGKVCSVE
ALIRWQDPDL GLIPPDQFIG IAEETGLIEP MGEWVLNQAM HDLRQWQQLG LQLNVAINVS
SRQCVNARGM GFDQVLQECF NRHHINPRNV HIEITESMLM GDASHCLSTL EAIRRLGSQI
YIDDFGTGYS SLSYLKKFPI SVIKIDRSFV ENALSNNSNT NLVKAIVMMG QSLEMELVAE
GIETEAQWNL LRDLGCHYAQ GYLISKPLPF AAITPLLSQT LPRLLQPQAP REKCVNA
|
|---|
| |