Gene SO_0093 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSO_0093 
Symbol 
ID1167991 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella oneidensis MR-1 
KingdomBacteria 
Replicon accessionNC_004347 
Strand
Start bp100974 
End bp102194 
Gene Length1221 bp 
Protein Length406 aa 
Translation table11 
GC content39% 
IMG OID637342106 
ProductNupC family protein 
Protein accessionNP_715735 
Protein GI24371693 
COG category[F] Nucleotide transport and metabolism 
COG ID[COG1972] Nucleoside permease 
TIGRFAM ID[TIGR00804] nucleoside transporter 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCAACAA TCATGAGTTG TATCGGTATT GCTGTTCTAG TCTTTATTGG GTATCTATTC 
TCCGAAAATA AACGCCAAAT AAAATTTAAA ACCATTGCAG GAGCATTAGC ACTTCAAATT
TTACTGGGTG CATTTGTTAT GTTTGTACCA GCAGGCGTCA CCATCATTGA AGCCATGAGC
AGTGGCGTCA ACAGTGTGAT TGCCTTTTCA AATTCTGGTT TAACCTTTGT TTTTGGCGAT
CTAGCTAACT ATAAATTAGG CTTTGTTTTC GTTATCAACG TACTTTGCGT AGTTATATTT
ATCTCTGCCT TAATCTCGGT ACTCTACTAC CTAAAAGTCA TGCAATTTAT CATTAATATC
ATTGGTGGTG GACTCTCTAA GGTATTAGGA ACAAGCAAAG CTGAATCCCT TTCTGCTACA
GCAAATATCT TTGTCGGTCC GATTGAAGCC CCATCGATGG TTCGACCCTT AGTCAAAAAC
ATGACCCGCT CCGAGTTATT TGCCGTTATG ACAGGCGGAT TAGCCAGTGT CGCGGGGGGA
ACTATGGTGG GATATATCAA CCTAGGTATT GATCCTAAAT ATATTCTAAC AGCTTGTTTT
ATGACCGCTC CAGCAGGCCT GTTATTTGCA AAGCTACTCT GCCCACAAAC TGAACACAAC
TTAGTTAATA ATGACAATAA AATCGAAGAC GCTGATCAGC CAAAAGGATT ATTAGAAGCC
ATAACCGATG GCTCTTTAAT GGGCATGAAC CAAGTCATTA CTGTAACGGC GTTATTAGTT
TCATTTGTAG CCATTATTGC ATTATTAAAT GGCATCATTG GTAGTATCGG CAATTTATTT
AGTATCGATA AACTTACATT AGAAATGATT ATTGGCTATC TACTATCTCC TTTAGCATTT
CTCATGGGAG TCCCTTGGTC TGAGGCAATA CCAGCAGCTT CAATTATTGG CCAAAAAATT
GCCATTAATG AATTTGTAGC TTATATCAGC TTCTTAGAAG TATCTAATAC TCTTTCAGAT
AAAACACAGG CCATTGTTGT CTTTAGCCTA TGTGGATTTG CCAATATTGG CTCACTTGCT
ATGGTCGTTG GTGGTATCGC TGCCATGTGT CCAGATAAAC GAGAACTTAT CACTCAAATT
GGCCCAAGGG TACTTTTAGC CGCAATCTTG GCCAATTTAA TGTCCGGCAC TATTGCTGGC
GCCCTAGTGT CATTAATGTA A
 
Protein sequence
MSTIMSCIGI AVLVFIGYLF SENKRQIKFK TIAGALALQI LLGAFVMFVP AGVTIIEAMS 
SGVNSVIAFS NSGLTFVFGD LANYKLGFVF VINVLCVVIF ISALISVLYY LKVMQFIINI
IGGGLSKVLG TSKAESLSAT ANIFVGPIEA PSMVRPLVKN MTRSELFAVM TGGLASVAGG
TMVGYINLGI DPKYILTACF MTAPAGLLFA KLLCPQTEHN LVNNDNKIED ADQPKGLLEA
ITDGSLMGMN QVITVTALLV SFVAIIALLN GIIGSIGNLF SIDKLTLEMI IGYLLSPLAF
LMGVPWSEAI PAASIIGQKI AINEFVAYIS FLEVSNTLSD KTQAIVVFSL CGFANIGSLA
MVVGGIAAMC PDKRELITQI GPRVLLAAIL ANLMSGTIAG ALVSLM