| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_0067 |
|---|
| Symbol | |
|---|
| ID | 1167965 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella oneidensis MR-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004347 |
|---|
| Strand | + |
|---|
| Start bp | 78057 |
|---|
| End bp | 80339 |
|---|
| Gene Length | 2283 bp |
|---|
| Protein Length | 760 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 637342080 |
|---|
| Product | penicillin-binding protein 1C, putative |
|---|
| Protein accession | NP_715709 |
|---|
| Protein GI | 24371667 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG4953] Membrane carboxypeptidase/penicillin-binding protein PbpC |
|---|
| TIGRFAM ID | [TIGR02073] penicillin-binding protein 1C |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGATCCG TTTACTTAGC CATAGTCGCC CTAGCCGTCA TTTTGCTAGG GCTTAGGCTT
TGGCCCGCGC AACCATTGAG TCAGCTGATG CCCAGTTCTC GTGAGGTGTT GGCTGCTGAT
GGGTCGTTAT TGCGCTTAAC CTTAGCCAGT GATGGCCAAT ATCGACTATG GCAAGATTTA
GAGGATATCT CTCCAACCAT GATTCAGGTC ATGCTGTTGA AGGAGGATCG CTATTTCTAC
TATCACCTCG GTGTTAATCC TGTCGCATTA GTACGTGCCA CCTTCGCCAC TTATGTTGAT
GGTGATCGTC AAGGTGGCTC GACGCTGACG ATGCAGTTAG TTCGACGAGT TTATGAGATT
AACAGCCGAT CTGTGCTGGG TAAGTTGGAG CAGATCTTGG CGGCGTTTTG GTTAGAGGCT
CGCTACAGTA AACGTGAACT ATTAGAGGCT TATCTTAACC TCGCGCCCAT GGGGGGAAAT
ATCGAGGGCG TTGGTGCTGC GAGTCAGATT TACTTTCATA AAGTAGCTGG TGAGCTGTCT
TTGAGCGAGG CTTTGAGCCT TGCGGTGATG CCCCAGAGTC CAGCGCGTCG AGCACGATTT
CAGGCTGATT TTCAAGCGGC AAGAGATAGA CTGGCGCTAT TTTGGCAGCA GACTTATCCG
GATGATCCTC GTAATCAAGG TCTGCAGGTA TTGACGGCTC TCGGTGCTGA ACGTAACGAG
CTGCCTTTTA AGGCGCCTCA TTTTGCGCGT CGACAGCTAC GCCAAGACGC AAGGATTGTT
CACACAACAA TAGAGCCTAA GTTACAAGCA CTGCTAGAAC TGCGCATTCG TCAGTATATT
ACGAGTAAGC GCCATTTAGG GGTGAATAAT GCGACCGCGC TGTTGATCGA TACCCGTGAT
CAGGCGATTA AGGCTTGGGT GGGCTCTGCT GATTTTTTTA ATCCCATGAT TTATGGTCAG
GTTGATGGTG TTACCGCCCG CCGCTCCCCA GGTTCGACGC TCAAACCCTT CCTCTATGCT
TTAGGTTTAG ATCAGGGGAT TATTCATCCC CAGAGCATAC TTAAAGATGC CCCAATGGCT
TTTGGAAGTT TCGAGCCGGA GAATTTCGAC CATCGATTCA CTGGCCCTAT TAGTGCTCGA
GATGCTTTGA TCAAAAGCCG TAATCTCCCT GCCGTGTGGC TTGCGGGGCA GTTGACTGAT
CCTAATTTGT ACGGTTTTTT ACGACAAGCC CAGATATTTG GATTAAGACA GGAAAGCCAT
TATGGATTGG CGCTTGCCTT AGGGGGAGGC GAGCTAACGA TGATGGAACT TGGCAGGCTC
TACCTTATGC TGGCAAGCGA AGGTCGTTAT TATCCCTTAC GGGAGCGGAC GGAGCAGCCC
ATTAATCCGC CGAGCATGCA GTTATTGAGT CCTGCAGCGA GTTTTCTGGT GTTGGATATG
CTAAAAGACA ATCCTCGTGC CGATGGGTTG CCAAGGCAGG GCTGGCGTGT GGCTTGGAAG
ACGGGGACCT CTTGGGGATT CCATGATGCG TGGAGCGCAG GGGTAGCAGG CCCCTATGTG
TTGGTGGTCT GGGTGGGCAA TTTCGATGCG ACACCCAATG CTGCGTTTAT CGGGGCAGAA
ATCGCAGGGC CATTATTCTT TAACATCACT GATGCTTTGC AGGCAAGCCT GCCGAGTACC
GCTGATAGAA TCTGGGCACC ACCGAATACC GTAAAAAAAG TGAACATCTG TGCTGAGTCT
GGTGAGTTAC CTAACCTGTG GTGCCCTAAA GTGATCGAGG GATGGTTTAT TCCGGGCGTC
TCACCCGTCA AAGTGTCAAC GCTACATCGT CCTGTTTGGG TGGATAACCA AACGGGTATG
GCGGTATGTC CACCCTATGA CGCCCAAACC CAGCATCAAG AAATCTTTGC CTTCTGGCCT
TCGGACATGG CGAGTTTATT TGAGCAGGCG GGGTTACCGC GTAAGTTAGC GCCTCAATTG
CCCGAATCGT GTCGTAACGC TATTCAGCTC AGTAACATCG ATCCTGTGAT TCGTTCCCCT
TTGAAAAATG TCACCTATAG CTTGAGGCAA AGTCATTTGC ATGAGCATAT TGCGTTGCTG
GCCGATGCTG CGCCCGATGC GAGCATGTTG TACTGGTTTG TTGGACGGGA TCTCATCGGT
CAAAGCTTAC CTAAGCAAGC CTTAGAATGG CGGCCCTCGA CATCGGGTGA CTATAAGTTA
TCAGTCACTG ACGATAAGGG CCGTAGTACG AGTTTGAATC TTAATGTCAG CATATTGCAC
TAA
|
|---|
| Protein sequence | MRSVYLAIVA LAVILLGLRL WPAQPLSQLM PSSREVLAAD GSLLRLTLAS DGQYRLWQDL
EDISPTMIQV MLLKEDRYFY YHLGVNPVAL VRATFATYVD GDRQGGSTLT MQLVRRVYEI
NSRSVLGKLE QILAAFWLEA RYSKRELLEA YLNLAPMGGN IEGVGAASQI YFHKVAGELS
LSEALSLAVM PQSPARRARF QADFQAARDR LALFWQQTYP DDPRNQGLQV LTALGAERNE
LPFKAPHFAR RQLRQDARIV HTTIEPKLQA LLELRIRQYI TSKRHLGVNN ATALLIDTRD
QAIKAWVGSA DFFNPMIYGQ VDGVTARRSP GSTLKPFLYA LGLDQGIIHP QSILKDAPMA
FGSFEPENFD HRFTGPISAR DALIKSRNLP AVWLAGQLTD PNLYGFLRQA QIFGLRQESH
YGLALALGGG ELTMMELGRL YLMLASEGRY YPLRERTEQP INPPSMQLLS PAASFLVLDM
LKDNPRADGL PRQGWRVAWK TGTSWGFHDA WSAGVAGPYV LVVWVGNFDA TPNAAFIGAE
IAGPLFFNIT DALQASLPST ADRIWAPPNT VKKVNICAES GELPNLWCPK VIEGWFIPGV
SPVKVSTLHR PVWVDNQTGM AVCPPYDAQT QHQEIFAFWP SDMASLFEQA GLPRKLAPQL
PESCRNAIQL SNIDPVIRSP LKNVTYSLRQ SHLHEHIALL ADAAPDASML YWFVGRDLIG
QSLPKQALEW RPSTSGDYKL SVTDDKGRST SLNLNVSILH
|
|---|
| |