Gene SO_0032 details

Gene Information

• Locus tag: SO_0032
• Symbol: def
• ID: 1167930
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella oneidensis MR-1
• Kingdom: Bacteria
• Replicon accession: NC_004347
• Strand: -
• Start bp: 37392
• End bp: 37898
• Gene Length: 507 bp
• Protein Length: 168 aa
• Translation table: 11
• GC content: 43%
• IMG OID: 637342041
• Product: peptide deformylase
• Protein accession: NP_715674
• Protein GI: 24371632
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0242] N-formylmethionyl-tRNA deformylase
• TIGRFAM ID: [TIGR00079] peptide deformylase

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCACTAT TAAAAGTTTT ACGCTTCCCC GATGAAAGAT TACGAACTCA AGCAACCCCT 
ATCACAGAGT TTAATGCTGA GTTGCAAACT CAAATCGATG ATATGTTTGA GACCATGTAC 
CAAGAAAAAG GGATTGGTTT GGCGGCAACC CAAGTTGACT ATCATAAACA ACTGATCGTC 
ATGGATTTAC AAGACGAGGT CGAGCGTCCA AAAGTCTTTA TCAATCCCGA GATTATTGCC 
AGTAGTGGCG ATTTTTGTAA CGAAGAAGGC TGCCTGTCTG TTCCCGGTAT TTATGCCAAA 
GTCGACCGCG CCGAGTTTGT TACTGTTAAA GCGCTGGATA GACACGGTAA TGAATTCACC 
GTTGAAGCCG ATGACCTCTT TGCTATTTGT ATTCAGCATG AAATGGATCA CCTGAAAGGT 
AAATTGTTTG TCGATTACCT GTCGCCATTG AAGCGTCAAC GGATCAAACA GAAACTTGAA 
AAAGCCGCCA AACAAGACGC CAAATAA 

 

Protein sequence

MALLKVLRFP DERLRTQATP ITEFNAELQT QIDDMFETMY QEKGIGLAAT QVDYHKQLIV 
MDLQDEVERP KVFINPEIIA SSGDFCNEEG CLSVPGIYAK VDRAEFVTVK ALDRHGNEFT 
VEADDLFAIC IQHEMDHLKG KLFVDYLSPL KRQRIKQKLE KAAKQDAK