Gene SO_0030 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSO_0030 
Symbolsun 
ID1167928 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella oneidensis MR-1 
KingdomBacteria 
Replicon accessionNC_004347 
Strand
Start bp35131 
End bp36417 
Gene Length1287 bp 
Protein Length428 aa 
Translation table11 
GC content50% 
IMG OID637342039 
Productsun protein 
Protein accessionNP_715672 
Protein GI24371630 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0144] tRNA and rRNA cytosine-C5-methylases 
TIGRFAM ID[TIGR00563] ribosomal RNA small subunit methyltransferase RsmB 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAACTTGC GTGCACTGGC AGCTAAAGCC ATCTTCGATG TATTAGAAAA AGGCGTATCG 
CTTTCTGTTG CCCTGCCAGA ACAGCAAAAA CACCTTGCCA GCGGCAAAGA TAAGGCCCTG
CTGGCTGAGC TCTGCTATGG CGTGATGCGC ACTTTACCGC AGATAGAAAA ACGCACCGCT
GAGTGTTTAG CCAAACCGCT CAAAGGCAAA CAAAGGATTA TCCACCAGCT GTTGATTGTG
GGCTGCTATC AGCTATATTT TACCCGTATT CCGAGCCACG CGGCCATATC CGAAACCGCT
GAAGCCTGCC GTCAGCTAAA GTTTGAAGGC ATGGTCAAAG TGGTCAATGG CGTGCTGCGA
AATATTCAAC GTCAATTAAC GCCGCTGAGT AATGAGTCTG AAACCTTAAG CTACAACACG
CCGGGTTGGT TAATTAAACG CTTAAAAACC GCTTACCCAG GCAACTGGCA AGAGATTATC
CAGCAAAGTC ATGAACGTCC CCCCATGTGG CTGCGTAACA ACCGCCTCTC CCAAAGCCGC
GACGAATACC TTGCGGCCTT GGATAAGCTT GAGATAGATG CCAGCGCGGG ATTGAGTGAT
GATGCAATCC TGCTTGCCGC CCCCAAAGAC GTTGCAACAT TACCGCTCTT CCTTGAAGGG
GCTGCCTCGG TACAAGATGG TGCAGCCCAA TGGGCAGCAA CCCTACTTGC CCCCCAAGCC
AATGAACTGA TCCTTGATGC CTGCGCAGCG CCCGGTGGTA AAAGTTGCCA TTTGCTGGAA
CTTGAACCTA GCATTAAGCT CATCGCCGTC GATTTTGATG CGAAACGTCT CGAACGCGTA
CAACAGAACC TTGACCGTTT GTCATTAAAA GCGGAAGTTA TTCATGGAGA TGCGGCCAAT
ATCGACTCAT GGTGGCAGGG CGAACAATTT GATCGTATCT TACTCGACGC ACCTTGCTCG
GCGACGGGAG TAATCCGCCG TCATCCCGAT ATCAAATGGT TACGTAAAAA CCATGACATA
GAAGAGCTGG CTGAACTACA AAGACAAATT TTGGATCACT GCTGGAAGTG GCTCAAACCC
GGTGGCACAC TTCTGTATGC GACTTGCTCC ATTTTGCCGC AGGAAAATCG AGACCAAATT
AGTGCATTTT TAGCCAGAAC CGCAGATGCT AAACTAGATA CACTCGTCCA GCAGGCCTCA
AGCCAAGATA TAGGTTGGCA AATCACGCCG GGACAACACA ACATGGATGG GTTTTATTAC
GCCCGTTTAT TGAAAGCGAC CCATTAG
 
Protein sequence
MNLRALAAKA IFDVLEKGVS LSVALPEQQK HLASGKDKAL LAELCYGVMR TLPQIEKRTA 
ECLAKPLKGK QRIIHQLLIV GCYQLYFTRI PSHAAISETA EACRQLKFEG MVKVVNGVLR
NIQRQLTPLS NESETLSYNT PGWLIKRLKT AYPGNWQEII QQSHERPPMW LRNNRLSQSR
DEYLAALDKL EIDASAGLSD DAILLAAPKD VATLPLFLEG AASVQDGAAQ WAATLLAPQA
NELILDACAA PGGKSCHLLE LEPSIKLIAV DFDAKRLERV QQNLDRLSLK AEVIHGDAAN
IDSWWQGEQF DRILLDAPCS ATGVIRRHPD IKWLRKNHDI EELAELQRQI LDHCWKWLKP
GGTLLYATCS ILPQENRDQI SAFLARTADA KLDTLVQQAS SQDIGWQITP GQHNMDGFYY
ARLLKATH