Gene SO_0020 details

Gene Information

• Locus tag: SO_0020
• Symbol: fadA
• ID: 1167918
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella oneidensis MR-1
• Kingdom: Bacteria
• Replicon accession: NC_004347
• Strand: -
• Start bp: 23307
• End bp: 24470
• Gene Length: 1164 bp
• Protein Length: 387 aa
• Translation table: 11
• GC content: 50%
• IMG OID: 637342029
• Product: 3-ketoacyl-CoA thiolase
• Protein accession: NP_715662
• Protein GI: 24371620
• COG category: [I] Lipid transport and metabolism
• COG ID: [COG0183] Acetyl-CoA acetyltransferase
• TIGRFAM ID: [TIGR01930] acetyl-CoA acetyltransferases; [TIGR02445] fatty oxidation complex, beta subunit FadA

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAACAAG CTGTTATCGT AGATTGCATT CGTACTCCTA TGGGCCGCTC TAAGGCTGGG 
GTGTTCCGTA ATGTGCGTGC AGAAACACTG TCTGCCGAAT TAATGAAAGG TCTATTACTG 
CGTAACCCGC AATTAGATCC CAACACCATT GAAGACGTGA TTTGGGGCTG TGTGCAACAG 
ACCTTAGAGC AAGGCTTCAA CATTGCCCGT AACGCATCGT TACTGGCAGG TATCCCGAAA 
ACGGCTGGCG CCGTAACGGT AAACCGCTTA TGTGGTTCTT CAATGGAAGC CATCCACCAA 
GCAGCACGTG CCATTATGAC AGGTATGGGC GACACCTTTA TCATTGGCGG TGTTGAACAT 
ATGGGCCACG TTCCGATGAA CCATGGTGTG GATTTCCACC CTGGTTTAGC CAATAACGTT 
GCTAAAGCTT CAGGTATGAT GGGCTTAACC GCTGAAATGC TCGGCAAGCT CCACGGCATT 
ACCCGTGAGC AACAGGATGC CTTTGCAGTG CGTTCACACC AACGCGCTTA TGCTGCGACG 
ATTGAAGGCC GTTTTGCCAA GGAAATCTAT GGCATTGAAG GCCATGATGC TACTGGTGCC 
TTAATTAAAG TGCTGCAAGA CGAAGTGATC CGCCCAGAAA CCACAATGGA ATCTCTAGCA 
GTACTGCGCC CAGTATTTGA TCCCGTAAAC GGGACTGTCA CTGCGGGTAC ATCTTCTGCA 
CTGTCTGATG GCGCTTCGGC AATGTTAATT ATGGAAGAGT CTAAGGCTCG CGCCTTAGGC 
TTACCTATCC GCGCACGCAT TCGCTCAATG GCCGTTGCTG GTTGTGATGC GGCAATCATG 
GGTTATGGCC CAGTCCCCGC AACTCAAAAG GCACTGGCTC GCGCAGGCAT CACAGTCAAT 
GACTTAGATG TTATTGAACT AAACGAAGCT TTTGCTGCCC AGTCTTTACC TTGTGTGAAA 
GATTTAGGCC TGCTGGATGT GGTTGATGAA AAGATTAACC TTAATGGTGG CGCGATTGCA 
CTTGGCCACC CACTGGGTTG TTCTGGCGCG CGTATCTCTA CGACGCTTAT TAACTTGATG 
GAACACAAAG ATGCAACCTT AGGTTTGGCA ACCATGTGTA TCGGTTTAGG CCAAGGTATT 
GCAACCGTTT TCGAACGAGT CTAA 

 

Protein sequence

MKQAVIVDCI RTPMGRSKAG VFRNVRAETL SAELMKGLLL RNPQLDPNTI EDVIWGCVQQ 
TLEQGFNIAR NASLLAGIPK TAGAVTVNRL CGSSMEAIHQ AARAIMTGMG DTFIIGGVEH 
MGHVPMNHGV DFHPGLANNV AKASGMMGLT AEMLGKLHGI TREQQDAFAV RSHQRAYAAT 
IEGRFAKEIY GIEGHDATGA LIKVLQDEVI RPETTMESLA VLRPVFDPVN GTVTAGTSSA 
LSDGASAMLI MEESKARALG LPIRARIRSM AVAGCDAAIM GYGPVPATQK ALARAGITVN 
DLDVIELNEA FAAQSLPCVK DLGLLDVVDE KINLNGGAIA LGHPLGCSGA RISTTLINLM 
EHKDATLGLA TMCIGLGQGI ATVFERV