Gene SO_0010 details

Gene Information

• Locus tag: SO_0010
• Symbol: recF
• ID: 1167908
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella oneidensis MR-1
• Kingdom: Bacteria
• Replicon accession: NC_004347
• Strand: +
• Start bp: 9539
• End bp: 10621
• Gene Length: 1083 bp
• Protein Length: 360 aa
• Translation table: 11
• GC content: 46%
• IMG OID: 637342019
• Product: recombination protein F
• Protein accession: NP_715652
• Protein GI: 24371610
• COG category: [L] Replication, recombination and repair
• COG ID: [COG1195] Recombinational DNA repair ATPase (RecF pathway)
• TIGRFAM ID: [TIGR00611] recF protein

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGCCTTA TCCGTCTTAA CATTGATTCT TTTCGCAATA TCCAGTTGGC GCAGTTGAGC 
CCAAGCGAAG GGATCAACCT GATTTATGGT CAAAATGGCA GTGGCAAAAC CAGCATACTT 
GAAGCCATTT ATTTTCTTGG CATGGGGCGT TCGTTTCGCA GTCACTTATC CCAGCGAGTG 
ATCAATAACG ACCAAGACAA ATTAACGCTG TTTGCAACCT TAAATCTGCC CCGAGGCGAC 
AGTAAAATAG GCCTGCGGCG TTTTCGCAGT GGCGAAACCG AAGTCAAAAT TGATGGTGAA 
AAGGTCAAAC GGCTATCGAC TTTAGCTGAA ACCTTACCCA TACAAGTCAT TACGCCGGAA 
AGCTTTTCGT TACTGTTCGA AGGCCCAAAA TCCCGCAGAC AGTTTATCGA TTGGGGGGCC 
TTTCATACCG ATCCGCAGTT TTATGCGGCA TGGATGAATG TAAGACGTGT TCTTAAACAA 
AGAAATCAAA TGCTTAGGAA TGGTTCTCCC TATGATCAAA TCCAATATTG GGATCGGGAG 
TTTATCCGTT ATACCGAGCA GGTGACTGAA ATACGAAACC GTTATGTAGA CTCGTTAAAT 
GAGCTACTTA AGGGTATAAT CGGGGAGTTT TTACCGCAGG TGGATGTTAA GGTTTCATTT 
ACCCGCGGCT GGGATAGCAA AACGGATTTT GCACAACTTC TCGAATCCCA ATATCCCAGA 
GATTTGGCCA CAGGTCATAC CGTCAGCGGT CCCCATAAAG CTGACTTAAG ACTTCGTGTA 
GGCACTTTGC CGGCGCAGGA TGCCCTGTCC CGTGGTCAAT TGAAATTGTT AGTCTGTGCA 
CTGCGTATTG CACAGGGAAA GTTGCTCAAA CAACAAATAG ATAAACACAG TATTTATCTT 
GTGGATGATC TTCCATCCGA GTTGGATGCA CAGCATAGGC AGCTATTGCT TAAGCAGCTA 
GTGGACACGG GTGCACAAGT GTTTGTGACC GCCATTGAGC CAGCAGCAAT AGTCGATTCG 
TTACACACGC CTCCCAGTAG GATGTTCCAT GTGGAACACG GACGTGTAAC GGTAATTGAA 
TAA 

 

Protein sequence

MSLIRLNIDS FRNIQLAQLS PSEGINLIYG QNGSGKTSIL EAIYFLGMGR SFRSHLSQRV 
INNDQDKLTL FATLNLPRGD SKIGLRRFRS GETEVKIDGE KVKRLSTLAE TLPIQVITPE 
SFSLLFEGPK SRRQFIDWGA FHTDPQFYAA WMNVRRVLKQ RNQMLRNGSP YDQIQYWDRE 
FIRYTEQVTE IRNRYVDSLN ELLKGIIGEF LPQVDVKVSF TRGWDSKTDF AQLLESQYPR 
DLATGHTVSG PHKADLRLRV GTLPAQDALS RGQLKLLVCA LRIAQGKLLK QQIDKHSIYL 
VDDLPSELDA QHRQLLLKQL VDTGAQVFVT AIEPAAIVDS LHTPPSRMFH VEHGRVTVIE