| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_0003 |
|---|
| Symbol | trmE |
|---|
| ID | 1167901 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella oneidensis MR-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004347 |
|---|
| Strand | - |
|---|
| Start bp | 2589 |
|---|
| End bp | 3962 |
|---|
| Gene Length | 1374 bp |
|---|
| Protein Length | 457 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 637342012 |
|---|
| Product | tRNA modification GTPase TrmE |
|---|
| Protein accession | NP_715645 |
|---|
| Protein GI | 24371603 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0486] Predicted GTPase |
|---|
| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00450] tRNA modification GTPase TrmE |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGGTATTT CCGTGACAAC TGACACTATC GTGGCACAGG CCACCGCGCC CGGACGAGGC
GGAGTGGGTA TCATACGTAT CTCAGGTGAT AAGGCGACGA ACGTTGCCAT GGCCGTATTA
GGTCATTTGC CTAAACCCCG TTATGCCGAT TATTGCTACT TTAAAAGTGC CTCTGGCCAA
GTCATAGACC AAGGCATAGC CTTGTTCTTT AAAGGCCCAA ACTCCTTCAC CGGTGAAGAT
GTTTTAGAGC TACAGGGCCA CGGCGGTCAA ATCGTTCTCG ACATGTTGAT CAAACGCGTG
CTCGAAGTTG AAGGCATTCG CATCGCCAAA CCCGGCGAGT TTAGTGAACA AGCCTTTATG
AACGACAAGC TCGACTTAAC CCAAGCCGAA GCCATTGCCG ACCTTATTGA TGCTACCAGT
GAACAAGCGG CTAAAAGCGC GCTGCAATCG CTCCAAGGTG AGTTTTCAAA GGAAGTGCAT
GAGCTGGTGG ACCAAGTCAC CCATCTGCGT TTATACGTCG AAGCCGCCAT TGATTTCCCC
GATGAAGAAG TCGACTTTTT AAGTGATGGC AAAATAGCCA ATGCGCTGTA TAAAATCATC
GACAAACTCA TTGCTGTTCA GGCCAGTGCC AAGCAAGGTT CTATCATTCG TGAAGGGATG
AAAGTGGTGA TTGCTGGTCG TCCAAATGCC GGAAAATCGA GCCTACTCAA CGCCCTTGCA
GGTAAAGAGT CGGCCATTGT GACCGAAATT GCCGGTACCA CACGCGATGT GTTGCGCGAA
CATATCCATT TAGATGGTAT GCCGCTGCAT ATTATCGACA CCGCAGGTTT ACGCGATACA
ACCGATACCG TTGAACAAAT TGGTATCGAG CGCGCATGGA ATGAAATCAA CAGCGCCGAT
CGGGTGTTAT TTATGGTCGA TGGCACAACA ACCACGGCTG TCGATCCCCA CGATATTTGG
CCCGATTTTA TCAATCGCCT CCCCACCAAT TTAGGGGTAA CTGTGATCCG TAATAAAGCG
GATCTCACCG GTGAAAACCT CGAAATGACC GAAGAAAAAG GCTATAGCGT CTATCGGATC
TCGGCCAAAA CAGGCCTCGG TGTTGACGAG TTAAAACAGC ACCTTAAATC GCTAATGGGT
TATCAAAGCA ACCTCGAAGG TGGCTTTATC GCCCGTCGCC GTCACCTTGA GGCCTTAGAA
ATAGCCGCAA GCCATCTGCA ACTCGGTAAA GAACAATTAG AAGTTTACCT CGCGGGCGAA
CTATTAGCGG AAGAACTGAG AATGGCGCAA TTAGCCCTAT CGGAAATTAC CGGACGTTTT
ACCTCAGACG ATCTACTCGG CAAAATTTTT AGCTCATTCT GTATCGGTAA GTAA
|
|---|
| Protein sequence | MGISVTTDTI VAQATAPGRG GVGIIRISGD KATNVAMAVL GHLPKPRYAD YCYFKSASGQ
VIDQGIALFF KGPNSFTGED VLELQGHGGQ IVLDMLIKRV LEVEGIRIAK PGEFSEQAFM
NDKLDLTQAE AIADLIDATS EQAAKSALQS LQGEFSKEVH ELVDQVTHLR LYVEAAIDFP
DEEVDFLSDG KIANALYKII DKLIAVQASA KQGSIIREGM KVVIAGRPNA GKSSLLNALA
GKESAIVTEI AGTTRDVLRE HIHLDGMPLH IIDTAGLRDT TDTVEQIGIE RAWNEINSAD
RVLFMVDGTT TTAVDPHDIW PDFINRLPTN LGVTVIRNKA DLTGENLEMT EEKGYSVYRI
SAKTGLGVDE LKQHLKSLMG YQSNLEGGFI ARRRHLEALE IAASHLQLGK EQLEVYLAGE
LLAEELRMAQ LALSEITGRF TSDDLLGKIF SSFCIGK
|
|---|
| |