| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BR0292 |
|---|
| Symbol | |
|---|
| ID | 1165953 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Brucella suis 1330 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004310 |
|---|
| Strand | + |
|---|
| Start bp | 302340 |
|---|
| End bp | 305495 |
|---|
| Gene Length | 3156 bp |
|---|
| Protein Length | 1051 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 637329242 |
|---|
| Product | hydrophobe/amphiphile efflux-1 family protein |
|---|
| Protein accession | NP_697326 |
|---|
| Protein GI | 23501199 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0841] Cation/multidrug efflux pump |
|---|
| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACAGGT TCTTTGTCGA TCGCCCGGTT TTCGCGGCGG TCATATCCAT CGTTCTCGTG
CTGGCTGGCC TCATCTGCAT CCGCATTCTG CCAGTTGCCC AATATCCCGA GCTGACGCCG
CCGCAGGTGG TTGTGAGCGC GACCTATCCG GGTGCAAGCG CGGAAACCGT GGCGCAGACC
GTTGCAGCGC CGCTGGAACA GCAGATCAAC GGCGTCGAGA ACATGCTTTA TATGCAGTCC
TCGAGCCTTG GTTCGGGCAC TATGCAATTG ACCGTGACCT TCGCACTGGG CACCGACCCG
GACCAGGCCA CGATCAACGT GAACAACCGC GTTCAACGCG CCACCTCCTC GCTGCCGCAG
GAAGTGCAGC GCCTTGGCGT GACCGTGGAC AAGCGTTTCA CGACCATTCT CGGCATGGTC
GCGATGTTCG CCACCACCGA TCGTTACGAC CGCACCTATG TCGGCAATTA TGCGCTTTTG
AACGTCGTGG ACGATCTCAA GCGCCTGCCG GGCGTAGGTG ACGTGCAGTT GCTCGGCAAT
ATCGATTATT CGATGCGCGT CTGGCTGCGC CCGGACAAGC TTGCCCAGTA CAATCTGACA
CCGAGCGATG TTTCCGCAGC CATTCAGGAA CAGAACGCGC AGTTCGCCGC TGGCCGTTTC
GGCGATCAGC CCGATCCGCA CGCAGGGCCC TTCACCTATA CGGCCACCAC ACAGGGCCGT
TTGCCGGATG CCGCCGCTTT CGAGAATATC ATCCTGCGCT CATCGAGCCA GAATGCCGCG
ACGCTTCGTC TGAAGGACGT GGCCCGTGTC GAGCTTGGCA CGGAAAGCTA TCTGGTTGAT
AGTAACCTGA ACGGTACGCC CGCCGTTCCG ATCGCGATCT ATCTCCAGCC GGGCGCGAAT
GCGCTCAACA CAATGGAGCT GATCCAGAAC CGGATGAACG AGCTGAAGGC AAGCTTTCCC
GCCGGTATCG ACTATGCGAT CCCCTTCGAT ACGACCAAGT TCATCAAGGT CTCCATCGAG
GAAGTGGTTC ACACCTTCAT CGAGGCTATC ATCCTCGTCG TGCTGGTGGT GTTCATCTTC
CTGCAGAACT GGCGTGCAAC ACTCATTCCC GTCATCGCGG TGCCGATCTC GATCATCGGT
ACATTTGCGG GCATGTATGT GCTTGGCTTC TCGATCAATC TTCTCACATT GTTCGGGCTT
GTGCTCGCCA TCGGTATCGT GGTCGACGAC GCCATCGTGG TGCTGGAAAA TGTCGAACGC
ATCATGACCA CCGAAAAACT CTCGCCACGC AAGGCCGCCA TCAAGGCCAT GGGCGAGGTG
ACGGGGCCGG TGATCGCTAT CGTTCTCGTG CTTTGCGCCG TGTTCATTCC GGTTGCGTTC
ATGGGCGGTC TGGTTGGCGA AATGTACAAG CAGTTCGCCG TCACCATCGC CATTTCTGTG
ACGCTCTCCG GCCTTGTGGC CCTGACGCTG ACGCCCGCAC TGTGCGCGCT CATCCTCAAG
CCCGGCCATC ATGAGCCGAT CCTGCCGTTC CGCATTTTCA ACCGTGCCTT CGAGCGCGTG
ACGAGCGGTT ATACGCGCGG TGTCCGCTTC TTCCTGAAGC GCGCCACCAT CGGCCTCATC
ATCTTTGCGG GCCTGCTCGG CAGCACTTAT TACCTGTTCG AGCGGGTTCC CGGTTCGCTA
TTGCCGGATG AAGACCAGGG CTTCCTGTTC GGTGTCGCCG TTCTGCCCCC AGCCGCTTCG
CTGGAGCGCA CGACTGTCGT GCTCGACCAG GTGAGCGAGA ACATCCGCAA GAACCCTGCC
GTGGACAATG TCTTCGCCGT CTCTGGCTTC GACCTTCTGT CGGGCGGTTT GAAGACCAGT
GCAGGCACCA TGTTCATCAT GCTCAAGGAC TGGAAGGAGC GCACCACGCC CGACGCGGAT
GCGCGCAACC TGCCACGCAC CATCATGGGC ATGAATGCCG GTATCAAGGA CGGCATGGTT
CTGGCCTTCA ACCCGCCTCC GATCATGGGT CTCAGCACGA CGGGCGGCTT TGAACTCTAT
GTTCAGGACC GCACGGGCGG CGGTGTGGAA TCGCTGACGC AGGCAACGAA GCTCATCACT
GAGGCGGCTG CCAAGCGCCC CGAATTGCAG GGCGTGCGCA CAACCTTCGA CCCGAATGTC
CCCCAATATG ACATTCAGCT CGACCGCGAG AAGGCCAAGG CGATGGGTGT GCCGATCAAT
TCGGTGTTCA CCGCCATGCA GGCAACCTTT GGCAGCCTCT ATGTGAATGA CTTCACGCTC
TATGGCCGCA ACTATCAGGT TAACCTGCAA TCGGAAGCGG AATTCCGCCG CGATCCGGGC
GATCTCAAGC ATGTTTTCGT GCGCGCCGAT TCCGGCAGCA TGATCCCTCT TGATGCGCTG
GTGACGGTGA AGCGTATTGT CGGTCCCGAC CAGCTTGAAC GTTTCAATGC GTTCAACGCC
GCAAAGGTCA CCGGCAACCC GGCTCCGGGC TATACGTCGG GTGATGCGAT CAAGGCCATG
CAGGAAGTGG CGGCGCAAGT TCTGCCGCAG GGCTACCAGA TCGCATGGAC CGGCTCGGCC
TATCAGGAAG TCTCCACCAG CGGCACCGGC TCGCAGGCGA TGATCTTCGG CCTTATCATG
GTGTTCCTGA TTCTCGCTGC GCAATATGAA CGCTGGAGCC TGCCGCTTGC GGTTATCACC
GCCGTGCCTT TCGCCATCTT CGGTGCGCTT CTGGCGACCG ATCTGCGCGG GCTTACCAAT
GACGTCTATT TCCAGATCGG TCTGGTGACG CTCATCGGTC TTGCGGCGAA AAACGCGATC
CTGATCGTGG AGTTCGCGGT GCTGGAGCGT GAGTCGGGTA AATCCGCAAT CGAGGCGGCG
GCATCGGCGG CGCGCCTGCG CTTCCGCCCG ATCGTGATGA CGTCGCTTGC CTTCATCCTG
GGCGTGGTGC CGCTTGCGGT CAGCACCGGG GCTGGCTCGG CCAGCCGTCA TTCCATCGGT
ACGGGCGTGA TCGGCGGTAT GCTGGCGGCG ACCTTCATCG CAACCTTCTT CATCCCGATG
TTCTACAGCC TGATCGCGCG CAAGCCGCCG AAGAAGCATG AGGATGAGAC AGCCGATACA
CCCGAAACGC CGGGCGGTAC GGGCGGCGGT ATTTGA
|
|---|
| Protein sequence | MNRFFVDRPV FAAVISIVLV LAGLICIRIL PVAQYPELTP PQVVVSATYP GASAETVAQT
VAAPLEQQIN GVENMLYMQS SSLGSGTMQL TVTFALGTDP DQATINVNNR VQRATSSLPQ
EVQRLGVTVD KRFTTILGMV AMFATTDRYD RTYVGNYALL NVVDDLKRLP GVGDVQLLGN
IDYSMRVWLR PDKLAQYNLT PSDVSAAIQE QNAQFAAGRF GDQPDPHAGP FTYTATTQGR
LPDAAAFENI ILRSSSQNAA TLRLKDVARV ELGTESYLVD SNLNGTPAVP IAIYLQPGAN
ALNTMELIQN RMNELKASFP AGIDYAIPFD TTKFIKVSIE EVVHTFIEAI ILVVLVVFIF
LQNWRATLIP VIAVPISIIG TFAGMYVLGF SINLLTLFGL VLAIGIVVDD AIVVLENVER
IMTTEKLSPR KAAIKAMGEV TGPVIAIVLV LCAVFIPVAF MGGLVGEMYK QFAVTIAISV
TLSGLVALTL TPALCALILK PGHHEPILPF RIFNRAFERV TSGYTRGVRF FLKRATIGLI
IFAGLLGSTY YLFERVPGSL LPDEDQGFLF GVAVLPPAAS LERTTVVLDQ VSENIRKNPA
VDNVFAVSGF DLLSGGLKTS AGTMFIMLKD WKERTTPDAD ARNLPRTIMG MNAGIKDGMV
LAFNPPPIMG LSTTGGFELY VQDRTGGGVE SLTQATKLIT EAAAKRPELQ GVRTTFDPNV
PQYDIQLDRE KAKAMGVPIN SVFTAMQATF GSLYVNDFTL YGRNYQVNLQ SEAEFRRDPG
DLKHVFVRAD SGSMIPLDAL VTVKRIVGPD QLERFNAFNA AKVTGNPAPG YTSGDAIKAM
QEVAAQVLPQ GYQIAWTGSA YQEVSTSGTG SQAMIFGLIM VFLILAAQYE RWSLPLAVIT
AVPFAIFGAL LATDLRGLTN DVYFQIGLVT LIGLAAKNAI LIVEFAVLER ESGKSAIEAA
ASAARLRFRP IVMTSLAFIL GVVPLAVSTG AGSASRHSIG TGVIGGMLAA TFIATFFIPM
FYSLIARKPP KKHEDETADT PETPGGTGGG I
|
|---|
| |