Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SAG1482 |
Symbol | vacB |
ID | 1014291 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Streptococcus agalactiae 2603V/R |
Kingdom | Bacteria |
Replicon accession | NC_004116 |
Strand | - |
Start bp | 1502203 |
End bp | 1504608 |
Gene Length | 2406 bp |
Protein Length | 801 aa |
Translation table | 11 |
GC content | 38% |
IMG OID | 637316654 |
Product | VacB/Rnb family exoribonuclease |
Protein accession | NP_688476 |
Protein GI | 22537625 |
COG category | [K] Transcription |
COG ID | [COG0557] Exoribonuclease R |
TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases [TIGR02063] ribonuclease R |
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Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 0.0098629 |
Plasmid hitchhiking | No |
Plasmid clonability | unclonable |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAGAAA AAATTATAAA ATATTTGGAA GAACACGGTA AAACCAGCGT TAATGATTTA GCTGCTGCCC TAGATATGGC AGGCGCAAAA GCATTTCCAA AATTAATCAA AACAATCTCA AATTTGGAGA GCCACAGGCA ATTAAGATTT GACGATAATG GAAGTCTTTC TCTTCAAAAG AAAGAAGCTA AGAAAAAGGA AATCACAGTA AGGGGTCTTT TTAGAGCAAA TAAAGCAGGA TTTGGTTTTC TTAGTATTGA CCAAGACGAA GATGATATGT TTATCGGAAA AAACGATATT GCTTATGCTA TTGATGGTGA CACGGTAGAA GCTGTTGTAA AGAAACCAGC GGACCGTCTT AACGGGACTG CAGCAGAAGC GCGTGTTGTT AATATTGTTG AACGTAGTTT AAAGACGCTT GTTGGTAAGT TTGTCTTAGA CGATGAGCGC CCTAAATACG CAGGATATAT CAAATCGAAA AATCAAAAAA TCAATCAAAA GATTTATATA CGCAAAGAAC CGGTCGTTTT AGACGGAACA GAAATTATCA AAGTAGATAT TGATAAATAT CCGACACGAG GACATGATTA CTTCGTAGCA AGTGTTCGTG ATATCGTTGG ACATCAAGGA GATGTTGGTA TTGATGTTTT AGAAGTCTTG GAAAGTATGG ATATCGTCTC AGAATTTCCT GAGGACGTTA TTGCAGAAGC CAATGCTATC CCAGATGCTC CAACGGAGAA AGATTTAATT GGGCGTGTTG ATTTACGTCA AGAGGTCACT TTCACTATTG ATGGAGCGGA CGCCAAAGAT TTAGACGATG CTGTGCATAT TAAATTACTG GATAATGGTC ATTTTGAACT TGGAGTTCAT ATCGCAGATG TATCATACTA CGTTACTGAA GGCTCTGCCT TAAATCGTGA AGCACTTAGT CGTGGTACGT CCGTATATGT CACAGATCGC GTTGTACCAA TGTTACCAGA GCGTCTATCT AACGGTATAT GTTCATTAAA TCCAAATCTT GATCGTTTAA CGCAGTCTTG TATTATGGAA ATTGACCAAA ATGGGAGAGT TGTTAATCAT CAAATTACAC AGTCAGTGAT TAATACCACT TATCGTATGA CTTATACCGC TGTAAATGAT ATTATTGCTG GCGATGAGGA AATCTGCTCA GAATATGAGT CTATTGTGTC CTCAGTACAG CATATGGTCA CTTTACACCA TACTTTGGAA GCTATGCGTA CGCGTCGTGG AGCGCTGAAT TTTGACACAT CTGAAGCAAA AATTATGGTT AATGATAAGG GAATGCCAGT TGATATTGTT ATTCGCAACA GAGGCATTGC TGAACGCATG ATTGAGTCAT TTATGTTGGC GGCAAATGAA ACGGTTGCTG AACATTATGC TCGTCTAAAA CTGCCATTTA TTTATCGTAT ACACGAAGAG CCTAAAGCTG AAAAATTACA AAAATTCATC GATTATGCTT CTGTTTTCGG TGTTCAGATT CAAGGAACAG CAACTAAAAT CACCCAATCT GCTTTACAGG ACTTTATGAA AAAAGTACAA GGGCAGCCAG GAAGTGAAGT GTTATCTATG ATGTTATTGC GCTCGATGCA ACAAGCTAGA TATTCTGAAC ACAACCATGG ACATTATGGA CTTGCTGCGG AATATTACAC TCACTTTACT AGCCCCATTC GACGTTATCC AGACTTGTTA GTTCATCGTA TGATTCGTGA TTATGATGAT AAAGCGATGG ATAAAGCTGA TCATTTTGCT AACCTTATCC CAGAAATTGC AACTCAAACG TCTAGTCTTG AGAGACGTGC CATTGATGCT GAACGTATTG TAGAGGCAAT GAAGAAAGCC GAATATATGG AAGAATATGT TGGTGAGGAA TTTGAAGGTG TGGTTGCAAG CGTTGTTAAA TTTGGTATGT TTGTAGAATT ACCAAATACT ATTGAAGGAT TGATTCACGT AACGACCTTG CCTGAATATT ATCACTTTAA TGAACGTACG CTGACGCTTC AAGGTGAGAA ATCTGGGAAA GTTTTCCGTG TTGGTCAACA AATTAAGGTT AAGTTGATTC GTTCTGATAA GGAAACTGGT GATATCGATT TTGATTATTT ACCATCAGAT TTTGATATTG TTGAAAAGGT AAGTAAAAGT TCGCGTGAGG GTCGTCCTAA TAGAAGTTCT AAACGAGAAC ATCAGCATAG AATTTCTGAT CGTGATAATA AGAATAAAAA TACATCTAAG AAAAAAGCAT CTCGAAAACC CAAAAGGAAC TCGGATAGCA AATCACATCA TCATAAAGAC GATAGAACAA CAGGTTCAAC CAAGAAAAAA ACGAAAAAAC CTTTCTATAA AGGCGTTGCT AAGAAAGGTC AGAAACGGAA ATCTAAGAAA GGTTAA
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Protein sequence | MKEKIIKYLE EHGKTSVNDL AAALDMAGAK AFPKLIKTIS NLESHRQLRF DDNGSLSLQK KEAKKKEITV RGLFRANKAG FGFLSIDQDE DDMFIGKNDI AYAIDGDTVE AVVKKPADRL NGTAAEARVV NIVERSLKTL VGKFVLDDER PKYAGYIKSK NQKINQKIYI RKEPVVLDGT EIIKVDIDKY PTRGHDYFVA SVRDIVGHQG DVGIDVLEVL ESMDIVSEFP EDVIAEANAI PDAPTEKDLI GRVDLRQEVT FTIDGADAKD LDDAVHIKLL DNGHFELGVH IADVSYYVTE GSALNREALS RGTSVYVTDR VVPMLPERLS NGICSLNPNL DRLTQSCIME IDQNGRVVNH QITQSVINTT YRMTYTAVND IIAGDEEICS EYESIVSSVQ HMVTLHHTLE AMRTRRGALN FDTSEAKIMV NDKGMPVDIV IRNRGIAERM IESFMLAANE TVAEHYARLK LPFIYRIHEE PKAEKLQKFI DYASVFGVQI QGTATKITQS ALQDFMKKVQ GQPGSEVLSM MLLRSMQQAR YSEHNHGHYG LAAEYYTHFT SPIRRYPDLL VHRMIRDYDD KAMDKADHFA NLIPEIATQT SSLERRAIDA ERIVEAMKKA EYMEEYVGEE FEGVVASVVK FGMFVELPNT IEGLIHVTTL PEYYHFNERT LTLQGEKSGK VFRVGQQIKV KLIRSDKETG DIDFDYLPSD FDIVEKVSKS SREGRPNRSS KREHQHRISD RDNKNKNTSK KKASRKPKRN SDSKSHHHKD DRTTGSTKKK TKKPFYKGVA KKGQKRKSKK G
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