Gene SAG1355 details

Gene Information

• Locus tag: SAG1355
• Symbol: rimM
• ID: 1014162
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Streptococcus agalactiae 2603V/R
• Kingdom: Bacteria
• Replicon accession: NC_004116
• Strand: -
• Start bp: 1366211
• End bp: 1366729
• Gene Length: 519 bp
• Protein Length: 172 aa
• Translation table: 11
• GC content: 34%
• IMG OID: 637316529
• Product: 16S rRNA-processing protein RimM
• Protein accession: NP_688353
• Protein GI: 22537502
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0806] RimM protein, required for 16S rRNA processing
• TIGRFAM ID: [TIGR02273] 16S rRNA processing protein RimM

Plasmid Coverage information

• Num covering plasmid clones: 2
• Plasmid unclonability p-value: 0.000868178
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGAATACT TTAACGTTGG AAAAATTGTC AATACACAAG GATTACAAGG CGAAATGCGT 
GTATTAAGCG TGACTGACTT TGTAGAAGAA CGCTTTAAAA AAGGTCAAGT GTTAGCTTTA 
TTCGATGAAA AGAATCAGTT TGTTATGGAT ATTGAAATTG CTAGTCATCG TAAGCAGAAG 
AATTTTGACA TTATAAAATT CAAAGGAATG TATCATATTA ATGATATTGA AAAATATAAA 
GGTTTCACAC TGAAGGTGGC AGAGGATCAA CTGAGCGACC TTAAAGATGG TGAATTTTAT 
TATCATGAAA TTATTGGCTT AGATGTCTAT GAAGGGGAAG AGCTGATTGG AAAAATCAAA 
GAAATTTTAC AACCAGGAGC AAATGACGTT TGGGTTGTGG AACGTCATGG AAAACGTGAT 
CTTTTATTAC CCTATATCCC GCCAGTAGTA TTAGAAGTGG ACCTTTCTAA TCAGCGTGTT 
CAAGTTGAAT TGATGGAAGG TTTAGATGAT GAAGATTGA 

 

Protein sequence

MEYFNVGKIV NTQGLQGEMR VLSVTDFVEE RFKKGQVLAL FDEKNQFVMD IEIASHRKQK 
NFDIIKFKGM YHINDIEKYK GFTLKVAEDQ LSDLKDGEFY YHEIIGLDVY EGEELIGKIK 
EILQPGANDV WVVERHGKRD LLLPYIPPVV LEVDLSNQRV QVELMEGLDD ED