| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SAG0161 |
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| Symbol | rpoC |
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| ID | 1012935 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Streptococcus agalactiae 2603V/R |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004116 |
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| Strand | + |
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| Start bp | 182980 |
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| End bp | 186630 |
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| Gene Length | 3651 bp |
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| Protein Length | 1216 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 637315339 |
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| Product | DNA-directed RNA polymerase subunit beta' |
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| Protein accession | NP_687196 |
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| Protein GI | 22536345 |
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| COG category | [K] Transcription |
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| COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
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| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type
[TIGR02386] DNA-directed RNA polymerase, beta' subunit, predominant form |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGGTTGACG TAAATCGTTT TAAAAGTATG CAAATCACAT TAGCATCACC AAGTAAGGTC
CGTTCATGGT CTTATGGTGA AGTTAAAAAA CCTGAAACAA TCAACTACCG CACATTGAAA
CCAGAACGTG AAGGACTTTT TGATGAAGTT ATTTTTGGTC CAACAAAAGA TTGGGAATGT
GCGTGTGGAA AATACAAACG TATTCGTTAC AAAGGAATCA TTTGTGACCG TTGTGGCGTT
GAAGTAACCC GTGCAAAAGT TCGTCGCGAA CGTATGGGAC ATATCGAGTT AAAAGCACCA
GTATCTCATA TCTGGTATTT CAAAGGTATC CCATCGCGTA TGGGGCTCAC ATTGGATATG
AGTCCTCGTG CACTTGAAGA AGTTATTTAT TTTGCGGCTT ATGTTGTTAT CGATCCAATG
GACACACCAT TAGAACCGAA GTCACTCCTT ACTGAGCGTG AATACCGTGA AAAACTTCAA
GAGTACGGTT ACGGTTCGTT TGTTGCTAAA ATGGGTGCTG AAGCCATTCA AGATCTTCTT
AAACGCGTTG ATTTAGATGC AGAAATCGCA GTTCTTAAAG AGGAGTTGAA ATCAGCGACA
GGTCAAAAAC GTGTGAAAGC AGTTCGTCGT CTGGATGTGT TAGATGCCTT TAAAAAATCT
GGAAATAAAC CAGAATGGAT GGTTCTTAAC ATTTTACCGG TTATCCCACC GGATCTTCGT
CCGATGGTTC AATTAGATGG TGGTCGTTTT GCGGCATCAG ACTTGAATGA CCTTTACCGC
CGTGTTATTA ACCGTAACAA TCGTTTGGCA CGTTTGTTGG AATTAAATGC TCCTGGCATC
ATCGTTCAAA ATGAAAAACG TATGTTACAA GAAGCTGTTG ATGCGCTTAT CGACAATGGT
CGTCGTGGTC GTCCAATTAC CGGACCAGGT AGTCGTCCTT TGAAATCATT AAGCCATATG
CTTAAAGGTA AACAAGGTCG TTTCCGCCAA AACTTGCTTG GTAAACGTGT TGACTTCTCT
GGACGTTCCG TTATTGCTGT TGGTCCAACA CTCAAAATGT ACCAATGTGG TGTACCACGT
GAAATGGCTA TTGAGCTCTT CAAACCTTTT GTAATGCGTG AAATCGTTGC TCGTGACCTC
GCAGGGAACG TTAAAGCAGC TAAACGTATG GTTGAACGTG GGGACGAGCG TATTTGGGAC
ATCTTAGAAG AAGTTATTAA AGAGCACCCA GTACTTCTAA ACCGTGCACC TACTCTTCAC
AGATTAGGTA TCCAAGCGTT TGAACCTGTC CTTATTGATG GTAAGGCGCT TCGTCTTCAC
CCACTTGTAT GTGAGGCCTA CAATGCTGAC TTTGATGGAG ACCAAATGGC CATCCACGTT
CCATTGTCTG AAGAAGCCCA AGCAGAAGCT CGTCTTTTGA TGCTTGCTGC AGAGCACATC
CTTAACCCTA AAGATGGTAA GCCAGTCGTA ACACCATCTC AGGACATGGT TTTAGGAAAT
TACTACCTGA CTATGGAAGA TGCTGGTCGT GAAGGTGAAG GCATGATTTT CAAAGATCAT
GACGAAGCAG TTATGGCATA TCAAAATGGT TATGTTCATT TACATACACG TGTTGGTATC
GCTGTTGATT CAATGCCGAA TAAGCCTTGG ACAGAAGAGC AAAAACATAA AATCATGGTT
ACAACAGTTG GTAAGATTCT CTTCAACGAT ATCATGCCTG AAGATTTACC GTACTTAATT
GAACCTAATA ATGCAAACTT GACAGAAAAA ACTCCAGATA AATACTTCTT AGAGCCAGGT
CAGGATATTC AAGCAGTTAT TGATAACTTA GAGATTAATA TTCCCTTTAA GAAGAAAAAT
CTTGGTAATA TTATCGCAGA AACTTTTAAA CGTTTCCGTA CAACAGAAAC TTCTGCTTTC
CTTGACCGTT TGAAGGACCT TGGATATTAT CATTCAACAC TTGCTGGTTT GACTGTGGGT
ATTGCTGATA TCCCAGTTAT TGACAATAAA GCTGAGATTA TTGATGCAGC TCACCACAGA
GTTGAAGATA TCAATAAAGC CTTCCGTCGA GGTTTGATGA CTGAAGAAGA TCGTTATGTT
GCTGTTACAA CAACATGGCG TGAAGCTAAA GAAGCACTTG AAAAACGTCT TATTGAGACA
CAAGATCCAA AGAACCCTAT CGTTATGATG ATGGACTCAG GAGCTCGTGG TAACATCTCA
AACTTCTCAC AACTTGCCGG TATGCGTGGT TTGATGGCTG CTCCTAACGG ACGTATCATG
GAATTGCCAA TCTTATCAAA CTTCCGTGAA GGTCTTAGTG TTTTGGAAAT GTTCTTCTCA
ACTCACGGTG CGCGTAAAGG TATGACTGAT ACGGCCCTTA AGACAGCCGA CTCAGGTTAC
CTTACTCGTC GTTTGGTTGA CGTTGCCCAA GATGTTATTA TTCGTGAAGA TGACTGTGGA
ACAGACCGCG GTTTGACAAT CACAGCAATT ACAGATGGTA AAGAGGTTAC TGAGACACTT
GAAGAGCGTT TGATAGGACG TTATACTAAG AAGTCAATCA AACATCCTGA GACAGGTGAA
ATTCTCGTTG GTGCAGATAC CTTAATTACT GAAGATATGG CTGCTAAAGT TGTTAAAGCG
GGCGTTGAGG AAGTAACTAT CCGATCAGTA TTTACATGTA ACACTCGCCA TGGTGTTTGT
CGTCACTGTT ACGGTATTAA CTTGGCAACA GGTGATGCTG TTGAGGTTGG TGAAGCAGTT
GGTACTATTG CAGCTCAATC TATCGGTGAA CCAGGGACAC AGCTTACAAT GCGTACCTTC
CATACCGGTG GTGTTGCTTC AAATACTGAT ATTACACAAG GTCTCCCACG TATCCAAGAA
ATCTTTGAAG CACGTAACCC TAAAGGTGAG GCAGTTATTA CTGAAGTTAA GGGTGAAGTC
GTTGCAATTG AAGAAGACTC TTCAACACGT ACTAAGAAAG TATTCGTTAA AGGTCAGACA
GGTGAGGGAG AATACGTTGT TCCATTTACA GCACGTATGA AAGTTGAAGT TGGTGATGAA
GTAGCTCGTG GTGCGGCCTT AACTGAAGGA TCTATCCAAC CAAAACGTCT CCTTGAAGTT
CGTGATACTT TATCTGTTGA AACGTACCTA CTTGCTGAAG TACAAAAAGT TTACCGTAGC
CAAGGGGTAG AAATCGGAGA TAAACACGTT GAGGTAATGG TTCGTCAAAT GCTCCGTAAA
GTTCGTGTCA TGGATCCAGG AGATACAGAT CTTCTTCCAG GTACACTTAT GGATATTTCA
GACTTTACAG ATGCTAACAA AGATATTGTT ATTTCTGGTG GAATCCCTGC GACAAGCCGT
CCTGTCCTTA TGGGTATTAC TAAGGCTTCC CTTGAAACTA ATTCATTCTT ATCAGCTGCA
TCCTTCCAAG AAACAACACG TGTCCTTACA GATGCTGCTA TCCGTGGTAA GAAAGATCAC
TTACTTGGTC TTAAAGAAAA TGTTATTATC GGTAAAATCA TTCCAGCGGG TACTGGTATG
GCTCGTTACC GTAATATTGA ACCACTTGCT GTTAATGAAG TTGAGATTAT TGAAGGAACT
CCTGTTGATG CAGAAGTTAC GGAAGTATCA ACACCTACAA CAGAAGATTA A
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| Protein sequence | MVDVNRFKSM QITLASPSKV RSWSYGEVKK PETINYRTLK PEREGLFDEV IFGPTKDWEC
ACGKYKRIRY KGIICDRCGV EVTRAKVRRE RMGHIELKAP VSHIWYFKGI PSRMGLTLDM
SPRALEEVIY FAAYVVIDPM DTPLEPKSLL TEREYREKLQ EYGYGSFVAK MGAEAIQDLL
KRVDLDAEIA VLKEELKSAT GQKRVKAVRR LDVLDAFKKS GNKPEWMVLN ILPVIPPDLR
PMVQLDGGRF AASDLNDLYR RVINRNNRLA RLLELNAPGI IVQNEKRMLQ EAVDALIDNG
RRGRPITGPG SRPLKSLSHM LKGKQGRFRQ NLLGKRVDFS GRSVIAVGPT LKMYQCGVPR
EMAIELFKPF VMREIVARDL AGNVKAAKRM VERGDERIWD ILEEVIKEHP VLLNRAPTLH
RLGIQAFEPV LIDGKALRLH PLVCEAYNAD FDGDQMAIHV PLSEEAQAEA RLLMLAAEHI
LNPKDGKPVV TPSQDMVLGN YYLTMEDAGR EGEGMIFKDH DEAVMAYQNG YVHLHTRVGI
AVDSMPNKPW TEEQKHKIMV TTVGKILFND IMPEDLPYLI EPNNANLTEK TPDKYFLEPG
QDIQAVIDNL EINIPFKKKN LGNIIAETFK RFRTTETSAF LDRLKDLGYY HSTLAGLTVG
IADIPVIDNK AEIIDAAHHR VEDINKAFRR GLMTEEDRYV AVTTTWREAK EALEKRLIET
QDPKNPIVMM MDSGARGNIS NFSQLAGMRG LMAAPNGRIM ELPILSNFRE GLSVLEMFFS
THGARKGMTD TALKTADSGY LTRRLVDVAQ DVIIREDDCG TDRGLTITAI TDGKEVTETL
EERLIGRYTK KSIKHPETGE ILVGADTLIT EDMAAKVVKA GVEEVTIRSV FTCNTRHGVC
RHCYGINLAT GDAVEVGEAV GTIAAQSIGE PGTQLTMRTF HTGGVASNTD ITQGLPRIQE
IFEARNPKGE AVITEVKGEV VAIEEDSSTR TKKVFVKGQT GEGEYVVPFT ARMKVEVGDE
VARGAALTEG SIQPKRLLEV RDTLSVETYL LAEVQKVYRS QGVEIGDKHV EVMVRQMLRK
VRVMDPGDTD LLPGTLMDIS DFTDANKDIV ISGGIPATSR PVLMGITKAS LETNSFLSAA
SFQETTRVLT DAAIRGKKDH LLGLKENVII GKIIPAGTGM ARYRNIEPLA VNEVEIIEGT
PVDAEVTEVS TPTTED
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