Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CJE1647 |
Symbol | ctsD |
ID | 3232275 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Campylobacter jejuni RM1221 |
Kingdom | Bacteria |
Replicon accession | NC_003912 |
Strand | - |
Start bp | 1546459 |
End bp | 1547871 |
Gene Length | 1413 bp |
Protein Length | 470 aa |
Translation table | 11 |
GC content | 28% |
IMG OID | 637292998 |
Product | general secretory pathway protein D |
Protein accession | YP_179628 |
Protein GI | 57238497 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1450] Type II secretory pathway, component PulD |
TIGRFAM ID | [TIGR02519] pilus (MSHA type) biogenesis protein MshL |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.948115 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGATAAGAT TAATATTAAT TAACATTCTT TTTTGCCATT ATCTTTATGC TTTAGATTGT CAAAAGCGTC TTTTTGATAT CAGTATTAAT GAAAAATTAA GCATACAAGA AAGTCTTGAT GAGCTTGCAA AATATTGTTC TTTTAGTATT ATTGTTAAAG ATAAAATTGC CAAAGAAAAA TTAGAAATAT TGCAAAACTC TGTCAATATT CATCAAATGA GTTTAGACGA AATTTTTAAT TTTTTTATCA AAGAGCATGA TCTTAGCTAT GATTTTGATG GTAAAATTTT AAGAATTTCA GGCATTAATA CGAAGATTTT TAAGATAAGT TATATCACTT CTATCAGAGA AGGACAAAGC ATAACTAAAG CGTCTGTAGA CGCTAAACCA AGGCAAAGTG AATATAGCGG TAGTTTTGAT GACGCAGAAG ACAATATGAT TAAAAGTATG GAAAAATTTG ATTTTTGGCA AAATATAGAA AAAGAGATTA TTGTATTATT AAAAAATTCT CATGAAGATT ATGAGGCTAA AACTCCCATT ATAAATCCCA ATGCAGGTCT TATTATAGTA ACTGGAACAA ATTCTCAGTT AAAAAGTGTG AAAAATTATT TGCAAAAACT AGAAAATCGT CTTAAAAAAC AAGTTATTAT CGATGTTAGC ATACTTGCTG TGAGTTTAAA TGAAAACCAT TCTAGTGGGA TTAATTGGCA AAATTTTAAT ATAGGTTTAA ATTCGCAAGT AAATAATGAA AATTCTTTTA TTCAGTTTCA AAATGGGCAA GGTTTTGTTA AGAATTTGGG TTTAAGGGTG AATTTAAATT TTGATTCTAT TATTAACTTT CTTTCTCAAA ATGGAAAAAC TAGCGTGCTT TCTAATCCAA AGCTTATGGC TTTAAATAAC CAACAAGCCA TTATTTCTGT AGGTGATACT ATAAATTATC AAGTTAAAGA AAGTTCTAAA GGCACTGAAA ATGGGACTAC TGTTAGTGAA AGTTATAACA ATTATTCTAT TTTTGTAGGC ATTTTACTCA ATATCTTGCC TGAAATTTCT GATGATGGAA AAATAATGCT CAGGATTAAT CCAAGCTTAA GTGATTTTAA GTATCCAGAA GATAATAAAC GACAAAAAGA ACCAAGAACT ATTGCTCCTG ATACCATACA AAAAAAGCTT TCTAGTGTTG TGCAAGTAGA GAATAATCAA ACTTTAATTT TAGGTGGATT GATTTCTCAC GATAAATCTA ATGAGAAAAA TTCTATCAAT TTTCTATCAA AAATTCCAAT CCTAGGTTCT TTGTTTAAAG GAGAAGTTTT AAATTCTAAA GCAACCGAAA TTGTTTTTAT TATCACTCCA AGTATAGTAG ATAGTGTAAA TGCTCCAAGT CTTAAAGATC TAGGATTTAA GCATTATGAG TAA
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Protein sequence | MIRLILINIL FCHYLYALDC QKRLFDISIN EKLSIQESLD ELAKYCSFSI IVKDKIAKEK LEILQNSVNI HQMSLDEIFN FFIKEHDLSY DFDGKILRIS GINTKIFKIS YITSIREGQS ITKASVDAKP RQSEYSGSFD DAEDNMIKSM EKFDFWQNIE KEIIVLLKNS HEDYEAKTPI INPNAGLIIV TGTNSQLKSV KNYLQKLENR LKKQVIIDVS ILAVSLNENH SSGINWQNFN IGLNSQVNNE NSFIQFQNGQ GFVKNLGLRV NLNFDSIINF LSQNGKTSVL SNPKLMALNN QQAIISVGDT INYQVKESSK GTENGTTVSE SYNNYSIFVG ILLNILPEIS DDGKIMLRIN PSLSDFKYPE DNKRQKEPRT IAPDTIQKKL SSVVQVENNQ TLILGGLISH DKSNEKNSIN FLSKIPILGS LFKGEVLNSK ATEIVFIITP SIVDSVNAPS LKDLGFKHYE
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