Gene CJE1081 details

Gene Information

• Locus tag: CJE1081
• Symbol: rpoD
• ID: 3231590
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Campylobacter jejuni RM1221
• Kingdom: Bacteria
• Replicon accession: NC_003912
• Strand: +
• Start bp: 1008679
• End bp: 1010547
• Gene Length: 1869 bp
• Protein Length: 622 aa
• Translation table: 11
• GC content: 31%
• IMG OID: 637292439
• Product: RNA polymerase sigma factor RpoD
• Protein accession: YP_179074
• Protein GI: 57237826
• COG category: [K] Transcription
• COG ID: [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
• TIGRFAM ID: [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain; [TIGR02937] RNA polymerase sigma factor, sigma-70 family

Plasmid Coverage information

• Num covering plasmid clones: 1
• Plasmid unclonability p-value: 0.502316
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAACGCCA AAACTCAAGA AGCTGAATTA GAAGAATTAT TTCAAGAAAA TGCAAAAGAT 
TATATCACAT ATGAAAAATT GGTAAAATAT CTTACAAAAC AACCAAGTGC ATCAACCGCT 
AAAAAAGTGC AAGCATTAAT GAAAAAACAC AAAGTGCAAC TTTTTTCAGC AGCTGAAATT 
GCACAAATGA AAAACATAGA AGATGCAAAA AGACTTCAAG AAGAAAAACA AAAACTCCAA 
GATACAAGCC TTGAGAACGA ATTTGATTTA GCCAATGAAA ACGATTTATT AGAATGGAGC 
AGATCAGACT CTCCTGTTCG TATGTATTTA AGAGAAATGG GACAAATTGC TTTATTAAAC 
AAAGATGAAG AAATTGAAAT TTCCAAAAAA ATAGAACTTG GCGAAGATAT TATCATTGAT 
GCTTTTTGTT CTGTACCTTA TTTGATAGAT TTTATTTTAG ATTATAAAGA ACCTTTAATA 
AACAGAGAAA GAAGGGTAAA AGAACTATTT AAAAGCTTTG ACGATGAAGA AAAAAGTGAT 
GATAAACTTG ATGAACTTGA TATAGATGAA GATGAAGAAA ACGAAACAGA ATTAGAATCA 
GATGAAGAAA ATACTAAAAA AAACAGCAAA AAAGAAGATG AAAGAACTTT AAAAGTTATA 
GAAAAATTTA AAGCTCTAGA AAAAGCTAAA AAAGATTGGC TAAAAACATC CAAAGACAAA 
GAAAGCGGAG ATGAACTTTT AGATAAATTA AGCATTGCGT TCAAAAAAAA TATTTTAAAA 
GAAAAATTAA TGGATCTAGG CCCTACTTCA AAACTTATTA GCGAAATCGT AAAATCAATG 
GAAACTGCAC TAAAAAGTGA TGAAGAATTT GACAAAGAAC TTAAGCGTTT AGAATACCGC 
TTACCTATGT TTTCTGATGA ACTTAAAAAA CGCCATGCAG ATATTTTAAA AGATATTACA 
AAATTGAGCA AAGAAGAAAT CACAGAGCGA GCTTTAGAAA CAACCATGGT AAGCACTTAT 
ATGGAAATTA AAAAACTATT TCAAACTAAA GAAGCCAGTG AAAAAAGCTT TGATCTTGAA 
AAATCACGCT TAAAAGAAAT TTTGGAGCAA ATTAAACGCG GTAAAAAAAT CTCTGATGAA 
GCAAAAGGAA GAATGGCAAA ATCAAACTTG CGCCTTGTTG TAAGCATAGC TAAACGCTAC 
ACAAATCGTG GTCTGCCTTT CTTAGACCTT ATCCAAGAAG GAAATATAGG TTTGATGAAA 
GCTGTGGATA AATTTGAATA CAAAAGGGGT TATAAATTTT CCACTTATGC AACTTGGTGG 
ATCAGGCAAG CTATTTCAAG GGCTATAGCT GATCAAGCAA GAACCATAAG AATTCCAATC 
CATATGATAG AAACCATCAA TCAAATTAAC AAAATTATCC GCGAACATCT ACAAAAAGAT 
GGAAAAGAAC CTGATGTCAG TGTTATAGCT AAAGAAGTAG GTTTAAGCGT AGATAAGGTT 
AAACAAGTTA TTAAAATCAC AAAAGAACCA ATTTCTCTTG AAGCTCCAAT AGGAAATGAA 
GATGATGGTA AATTTGGAGA TTTTGTTGAA GATAGAAATT CACTTTCTCC AATGGATCAT 
ATCTTAAAGG ATGATTTAAA AGAACAAATT GATGAAGTTT TAGATCAATT AAACGATAGA 
GAAAAAGCGG TAATTCGTAT GCGTTTTGGT TTAATGGATG ATGAAAGTGA TAGAACTTTA 
GAGGAAATTG GAAAGGAACT TAATGTCACT CGAGAAAGAG TGAGACAAAT AGAAAGCTCA 
GCTATAAAAA AACTCAAACA CCCTAAAGTA GGAAGAAAAC TAAAAAATTA TATAGAAGGT 
TGGAAGTAA 

 

Protein sequence

MNAKTQEAEL EELFQENAKD YITYEKLVKY LTKQPSASTA KKVQALMKKH KVQLFSAAEI 
AQMKNIEDAK RLQEEKQKLQ DTSLENEFDL ANENDLLEWS RSDSPVRMYL REMGQIALLN 
KDEEIEISKK IELGEDIIID AFCSVPYLID FILDYKEPLI NRERRVKELF KSFDDEEKSD 
DKLDELDIDE DEENETELES DEENTKKNSK KEDERTLKVI EKFKALEKAK KDWLKTSKDK 
ESGDELLDKL SIAFKKNILK EKLMDLGPTS KLISEIVKSM ETALKSDEEF DKELKRLEYR 
LPMFSDELKK RHADILKDIT KLSKEEITER ALETTMVSTY MEIKKLFQTK EASEKSFDLE 
KSRLKEILEQ IKRGKKISDE AKGRMAKSNL RLVVSIAKRY TNRGLPFLDL IQEGNIGLMK 
AVDKFEYKRG YKFSTYATWW IRQAISRAIA DQARTIRIPI HMIETINQIN KIIREHLQKD 
GKEPDVSVIA KEVGLSVDKV KQVIKITKEP ISLEAPIGNE DDGKFGDFVE DRNSLSPMDH 
ILKDDLKEQI DEVLDQLNDR EKAVIRMRFG LMDDESDRTL EEIGKELNVT RERVRQIESS 
AIKKLKHPKV GRKLKNYIEG WK