Gene CJE0689 details

Gene Information

• Locus tag: CJE0689
• Symbol: ligA
• ID: 3231989
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Campylobacter jejuni RM1221
• Kingdom: Bacteria
• Replicon accession: NC_003912
• Strand: +
• Start bp: 621674
• End bp: 623617
• Gene Length: 1944 bp
• Protein Length: 647 aa
• Translation table: 11
• GC content: 34%
• IMG OID: 637292052
• Product: NAD-dependent DNA ligase LigA
• Protein accession: YP_178701
• Protein GI: 57238218
• COG category: [L] Replication, recombination and repair
• COG ID: [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II)
• TIGRFAM ID: [TIGR00575] DNA ligase, NAD-dependent

Plasmid Coverage information

• Num covering plasmid clones: 2
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAAAAAG AAGAGTATTT AGAAAAAGTT GCTTTAGCTA ATTTGTGGAT GAGGGCATAT 
TATGAAAAAG ATGAACCCTT GGCTAGCGAT GAAGAATACG ATGCTTTAAT CAGAGAATTA 
AGAGTTTTTG AAGAACAAAA TAAAGATGAA ATTTCAAAAG ACTCTCCAAC GCAAAAAATA 
GCTCCTACTA TACAAAGCGA GTTTAAAAAA ATAGCTCATT TAAAGCGTAT GTGGTCGATG 
GAAGATGTGT TTGATGAGAG TGAGCTTAGA GCTTGGGCAA AACGCGCAAA ATGTGAAAAA 
AACTTTTTTA TAGAGCCTAA ATTTGATGGA GCGAGTTTAA ATTTGCTTTA TGAAAATGGT 
AAATTAGTAA GCGGCGCCAC TAGGGGCGAT GGCGAAGTGG GTGAGGATAT AACGCTTAAT 
GTTTTTGAGA TAGAAAATAT ACCTAAAAAT ATAGCCTATA AAGAAAGGAT AGAAATTCGT 
GGAGAAGTGG TGATTTTAAA AGATGATTTT GAGAAAATCA ACGAAAAAAG AGCCCTTTTA 
AATCAAAGTT TATTTGCCAA TCCACGCAAT GCTGCAAGTG GGAGTTTAAG GCAGCTTGAT 
ACAAGCATCA CTAAAGAAAG AAATTTGAAA TTTTATCCTT GGGGAGTAGG GGAAAATACC 
TTAAATTTCA CCAAACACAG CGAGGTGATG CAATTTATCA GAGAGCTTGG TTTTTTAAAG 
GATGATTTTG TAAGACTTTG CGCTAATTTA GACGAAGTTT TAAAAGCTTA TGATGAGCTT 
TTAGTTCTAA GAGAAAAAAA ACCTATGATG ATGGATGGAA TGGTGGTAAG AGTTGATGAT 
CTTGCACTTT GTGAAGAATT AGGCTATACG GTAAAATTTC CAAAATTTAT GGCAGCTTTT 
AAATTTCCTG CGCTTGAAAA AACCACGCGT TTAATAGGGG TAAATTTACA AGTAGGAAGA 
AGTGGAGCGA TCACTCCTGT GGCAGTTTTA GAACCTGTAA ATTTAGATGG GGTTGTAGTA 
AAATCAGCCA CCCTTCATAA TTTTGATGAA ATTGCAAGAC TTGATGTTAA AATCAATGAT 
TTTGTAAGCG TGATAAGAAG TGGCGATGTT ATCCCTAAAA TCACTAAGGT TTTTAAAGAG 
CGTAGAGAAG GTTTAGAGAT GGAAATTTCA CGCCCTAAGC TTTGTCCTAC TTGCCAAAGT 
GAGCTTTTGG ATGAAGGAAC TTTAATAAAA TGTCAAAATA TAGATTGTGA AGATAGACTT 
GTAAATTCTA TCATTCATTT TGTTTCTAAA AAATGTCTTA ATATCGACGG ACTGGGAGAA 
AATATAGTAG AACTTTTATA CAAGCACAAA AAAATCACTA CGCTTGAGAG TATTTTTCAT 
TTAAAATTTA ATGATTTTGA AGGTTTGGAA GGCTTTAAAG AAAAGAAAAT TAACAATCTT 
TTAAATGCCA TAGAACAAGC AAGAGAATGT GAGCTTTTTC GTTTTATCAC AGCTTTAGGA 
ATAGAGCATA TTGGCGAGGT TGCGGCTAAA AAATTAAGTT TAAGTTTTGG TAAAGAGTGG 
TACAAGCAAA GCTTTGAAGC TTATGCTAAT TTAGAAGGTT TTGGAGAGCA AATGGCTTTA 
AGTCTTTGCG AATTTACGCG TGTTAATCAT ACAAGAATTG ATGAGTTTTA CAAGCTTTTA 
AATTTGAAAA TAGAAAAACT TGAAATCAAA AGCGATGGTG TGATTTTTGG TAAAACTTTT 
GTGATTACAG GCACTCTTTC ACGCCCAAGA GATGAGTTTA AGGCTTTGAT AGAAAAGCTT 
GGGGGTAAGG TAAGCGGCTC GGTTTCTAAA AAGACTGACT ATGTGCTTTT TGGAGAAGAG 
GCAGGTTCTA AGCTTAGTAA GGCTAAAGAG CTTGAAGTAA AATGTATAGA TGAAAGTGCT 
TTTAATGAGC TTGTTAAAGA ATAG 

 

Protein sequence

MKKEEYLEKV ALANLWMRAY YEKDEPLASD EEYDALIREL RVFEEQNKDE ISKDSPTQKI 
APTIQSEFKK IAHLKRMWSM EDVFDESELR AWAKRAKCEK NFFIEPKFDG ASLNLLYENG 
KLVSGATRGD GEVGEDITLN VFEIENIPKN IAYKERIEIR GEVVILKDDF EKINEKRALL 
NQSLFANPRN AASGSLRQLD TSITKERNLK FYPWGVGENT LNFTKHSEVM QFIRELGFLK 
DDFVRLCANL DEVLKAYDEL LVLREKKPMM MDGMVVRVDD LALCEELGYT VKFPKFMAAF 
KFPALEKTTR LIGVNLQVGR SGAITPVAVL EPVNLDGVVV KSATLHNFDE IARLDVKIND 
FVSVIRSGDV IPKITKVFKE RREGLEMEIS RPKLCPTCQS ELLDEGTLIK CQNIDCEDRL 
VNSIIHFVSK KCLNIDGLGE NIVELLYKHK KITTLESIFH LKFNDFEGLE GFKEKKINNL 
LNAIEQAREC ELFRFITALG IEHIGEVAAK KLSLSFGKEW YKQSFEAYAN LEGFGEQMAL 
SLCEFTRVNH TRIDEFYKLL NLKIEKLEIK SDGVIFGKTF VITGTLSRPR DEFKALIEKL 
GGKVSGSVSK KTDYVLFGEE AGSKLSKAKE LEVKCIDESA FNELVKE