| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CJE0529 |
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| Symbol | rpoC |
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| ID | 3231290 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Campylobacter jejuni RM1221 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003912 |
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| Strand | + |
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| Start bp | 481278 |
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| End bp | 485831 |
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| Gene Length | 4554 bp |
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| Protein Length | 1517 aa |
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| Translation table | 11 |
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| GC content | 35% |
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| IMG OID | 637291895 |
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| Product | DNA-directed RNA polymerase, beta' subunit |
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| Protein accession | YP_178547 |
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| Protein GI | 57237533 |
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| COG category | [K] Transcription |
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| COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
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| TIGRFAM ID | [TIGR02386] DNA-directed RNA polymerase, beta' subunit, predominant form |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTAAAT TTAAAGTAAT AGAAATTAAA GAAGATGCAA GACCTAGAGA TTTTGAAGCA
TTTCAACTAA GACTTGCAAG TCCTGAAAAA ATCAAATCAT GGTCTTATGG AGAAGTAAAA
AAACCAGAAA CTATTAATTA TAGAACCTTA AAGCCTGAAA GAGATGGGCT TTTTTGTGCA
AAGATTTTTG GACCTATAAG AGATTATGAG TGTCTTTGTG GTAAATACAA AAAAATGCGT
TTTAAAGGCG TTAAGTGTGA AAAATGTGGT GTTGAAGTAG CAAATTCAAA AGTGCGTCGT
TCTAGAATGG GGCATATCGA GCTTGTAACT CCTGTGGCTC ATATTTGGTA TGTTAATTCT
CTTCCAAGCC GTATAGGAAC GCTTTTGGGT GTTAAGATGA AAGATCTTGA GCGCGTGCTT
TATTATGAAG CTTATATTGT TGAAAACCCA GGTGATGCTT TCTATGATAA TGAAAGTACT
AAAAAAGTGG AATATTGCGA TGTTTTGAAC GAAGAGCAAT ATCAAAATTT AATGCAACGC
TATGAAAATA GCGGCTTTAA AGCAAGAATG GGTGGAGAAG TTGTTCGTGA TTTACTTGCA
AATTTAGATC TTGTAGCGCT TTTAAATCAG CTTAAAGAAG AAATGGGGGC TACAAATTCA
GAGGCTAAGA AAAAAACTAT CATTAAACGC TTAAAAGTTG TAGAAAATTT CTTAAATTCA
AATTTAAACG CCAATACCGA TAGCGACGAA GCTGTACCAA ATCGTCCTGA ATGGATGATG
ATTACAAATC TTCCAGTTTT ACCGCCAGAT TTGCGTCCTT TAGTGGCTTT AGATGGTGGG
AAATTTGCAG TTTCTGATGT GAATGACTTA TATCGTCGTG TTATCAATAG AAATACACGT
CTTAAAAAAC TTATGGAACT TGATGCACCT GAAATCATTA TCAGAAATGA AAAAAGAATG
CTTCAAGAGG CTGTTGATGC GCTTTTTGAC AACGGTCGTC GTGCTAATGC TGTAAAAGGA
GCAAATAAAC GCCCATTGAA ATCTTTAAGT GAAATCATCA AAGGGAAACA AGGACGTTTT
AGACAAAATC TACTAGGTAA AAGGGTGGAT TTCTCAGGTC GTAGCGTTAT TGTTGTAGGT
CCAAAACTTA GAATGGATCA ATGCGGTTTA CCTAAAAAAA TGGCTTTAGA GCTTTTTAAG
CCACATCTTT TAGCTAAGCT TGAAGAAAAA GGTTATGCAA CCACAGTAAA ACAAGCTAAA
AAAATGATAG AAAATAAAAC CAATGAAGTT TGGGAATGTT TAGAAGAGGT AGTAAAGGGA
CATCCTGTTA TGCTAAACCG TGCACCTACT TTGCATAAGC TTTCTATCCA AGCTTTTCAT
CCTGTTTTAG TGGAAGGTAA GGCTATACAA CTTCATCCTT TGGTTTGTGC AGCATTTAAC
GCAGACTTTG ATGGGGATCA AATGGCAGTG CATGTACCGC TTTCTCAAGA GGCTATTGCA
GAATGTAAAG TGCTTATGCT TTCATCAATG AATATTCTTT TACCAGCAAG CGGTAAGTCT
GTAACCGTTC CATCGCAAGA TATGGTTTTA GGAATTTATT ATCTTTCGTT GGAAAAAGCA
GGTGCTAAAG GTTCGCATAA AATTTGTACA GGCATTGATG AAGTGATGAT GGCACTTGAA
AGCAAGTGTT TGGATATTCA TGCGAGCATA CAAACTATGG TAGATGGTAG AAAGATTACC
ACTACAGCAG GAAGATTGAT TATTAAATCC ATCTTGCCTG ATTTTGTGCC TGAAAATAGT
TGGAATAAAG TCTTAAAGAA AAAAGACATT GCTGCACTTG TAGATTATGT TTATAAACAA
GGTGGTTTAG AGATTACAGC AAGTTTCTTA GATAGACTTA AAAATTTAGG TTTTGAATAT
GCAACTAAAG CAGGTATTTC AATTTCGATT GCAGATATTA TTGTTCCTAA TGATAAACAA
AAAGCTATCG ATGAAGCAAA AAAACAAGTA AGAGAAATTC AAAATTCTTA TAATCTCGGT
TTGATTACTT CAGGGGAAAG ATACAATAAA ATCATTGATA TTTGGAAAAG TACAAACAAT
GTTCTTTCAA AAGAAATGAT GAAGCTTGTA GAAAAAGATA AAGAAGGTTT TAACTCTATT
TATATGATGG CAGATTCTGG TGCTAGGGGT AGTGCAGCTC AAATTTCTCA GCTTGCTGCG
ATGAGAGGAC TTATGACCAA ACCTGATGGT TCTATTATCG AAACGCCTAT TATTTCAAAT
TTCCGTGAAG GGCTAAATGT TCTTGAATAC TTTATTTCAA CTCACGGTGC TAGAAAAGGT
CTTGCAGATA CCGCTCTTAA AACAGCAAAT GCGGGTTATT TGACAAGAAA ACTCATCGAT
GTTGCACAAA ATGTAAAAAT TACCATTGAA GATTGTGGAA CACATGAGGG TGTTGAAATC
AATGAAATTA CCGCAGATAG TTCTATTATA GAAACTTTAG AAGAAAGAAT TTTAGGCAGG
GTTTTAGCTG AGGATGTGAT TGATCCTATT ACAAATTCTG TGCTTTTTGC AGAAGGTACT
TTAATGGATG AGGAAAAAGC AAAAATTCTT GGCGAAAGCG GTATAAAAAG TGTCAATATC
CGCACTCCTA TTACCTGCAA AGCTAAAAAA GGAATTTGTG CAAAATGTTA TGGTATCAAT
CTTGGTGAAG GTAAATTAGT AAAACCAGGC GAAGCAGTGG GAATTATTTC CGCTCAATCT
ATCGGTGAAC CAGGAACGCA GCTAACTCTA AGAACTTTCC ATAGCGGGGG AACTGCAAGT
ACGGATTTAC AAGATAGACA AGTAAGCGCA CAAAAAGAAG GTTTTATAAG ATTTTATAAT
CTTAAAACTT ATAAAAACAA AGAAGGTAAA AATATCGTAG CAAATCGTAG AAATGCGGCG
GTTTTACTTG TGGAGCCAAA AATCAAAACT CCATTTAAAG GTGTGATTAA TATAGAAAAT
ATTCATGAAG ATGTGATTGT TTCTATTAAA GATAAAAAAC AAGAAGTAAA ATACATATTA
AGAAAATACG ATCTTGCTAA ACCAAATGAA TTAGCAGGTG TAAGTGGCAG TATAGATGGA
AAACTTTATT TGCCATATCA AAGCGGCATG CAAGTAGAAG AAAATGAAAG TATCGTAGAA
GTGATTAAAG AGGGTTGGAA TGTACCAAAT CGTATTCCTT TTGCGAGTGA AATTTTAGTA
GAAGATGGCG AGCCTGTAGT TCAAAATATC AAAGCAGGCG AAAAAGGAAC ACTCAAATTT
TACATCCTTA AAGGCGATGG TTTAGATAGA GTAAAAAATG TTAAAAAAGG TGATATTGTT
AAAGAAAAAG GATTCTTTGT AGTGATTGCT GATGAAAATG ATAGAGAAGC AAAAAGACAC
TATATCCCAA GAGAATCTAA GATAGAATTT AACGATAGTG AAAAAATCGA TGACGCAAAT
ACTATCATTG CAAGTGCTCC TAAAAAAGAA AGAAAAGTGA TTGCAGAATG GGATGCTTAT
AATAATACTA TCATTGCAGA AATTGATGGT GTTGTAAGCT TTGAGGATAT TGAAGCAGGT
TATAGTGCTG ATGAGCAAAT TGATGAAGCT ACAGGTAAGC GTTCTTTAGT AATTAATGAG
TATTTACCTA GCGGAGTTAG ACCAACTTTG GTAATTGCAG GAAAAGGTGA TAAAGCTGTG
CGTTATCACC TTGAACCAAA AACCGTTATT TTTGTTCATG ATGGCGATAA AATTGCTCAA
GCAGATATTT TAGCAAAAAC TCCAAAAGCA GCAGCTAAAT CAAAGGATAT TACAGGAGGT
CTTCCAAGAG TTTCTGAGCT TTTTGAAGCA AGAAAACCAA AAAATGCGGC TGTGATTGCA
GAAATTGATG GTGTTGTTCG TTTTGATAAG CCTTTGCGTT CTAAAGAAAG AATTATTATC
CAAGCAGAAG ATGGAACAAG TGCTGAGTAT TTAATCGACA AATCAAAACA TATTCAAGTA
AGAGATGGAG AGTTTATTCA TGCAGGTGAA AAACTTACAG ATGGAGTTGT TTCGAGTCAT
GATGTGCTTA AAATTTTAGG TGAAAAAGCC TTGCATTATT ATTTGATTTC TGAAATTCAG
CAAGTTTATC GCGGACAAGG TGTTGTGATT TCTGATAAAC ATATAGAAGT TATCGTTTCT
CAAATGCTAA GACAAGTAAA AGTTGTAGAT AGTGGACATA CGAAATTTAT TGAAGGTGAT
TTGGTTTCAA GACGTAAATT CCGTGAAGAA AATGAAAGAA TCATTAGAAT GGGTGGAGAA
CCAGCTATTG CCGAGCCTGT GCTTTTAGGT GTAACAAGAG CAGCGATTGG AAGTGATAGT
GTGATTTCTG CGGCTTCATT CCAAGAAACT ACCAAAGTTT TAACTGAAGC AAGTATAGCA
GGTAAATTTG ACTACTTAGA AGATTTAAAA GAAAATGTTA TTCTAGGTAG AATGATTCCT
GTTGGAACAG GGCTTTATGG CGAACAAAAT TTAAAACTTA AAGAACAAGA ATAA
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| Protein sequence | MSKFKVIEIK EDARPRDFEA FQLRLASPEK IKSWSYGEVK KPETINYRTL KPERDGLFCA
KIFGPIRDYE CLCGKYKKMR FKGVKCEKCG VEVANSKVRR SRMGHIELVT PVAHIWYVNS
LPSRIGTLLG VKMKDLERVL YYEAYIVENP GDAFYDNEST KKVEYCDVLN EEQYQNLMQR
YENSGFKARM GGEVVRDLLA NLDLVALLNQ LKEEMGATNS EAKKKTIIKR LKVVENFLNS
NLNANTDSDE AVPNRPEWMM ITNLPVLPPD LRPLVALDGG KFAVSDVNDL YRRVINRNTR
LKKLMELDAP EIIIRNEKRM LQEAVDALFD NGRRANAVKG ANKRPLKSLS EIIKGKQGRF
RQNLLGKRVD FSGRSVIVVG PKLRMDQCGL PKKMALELFK PHLLAKLEEK GYATTVKQAK
KMIENKTNEV WECLEEVVKG HPVMLNRAPT LHKLSIQAFH PVLVEGKAIQ LHPLVCAAFN
ADFDGDQMAV HVPLSQEAIA ECKVLMLSSM NILLPASGKS VTVPSQDMVL GIYYLSLEKA
GAKGSHKICT GIDEVMMALE SKCLDIHASI QTMVDGRKIT TTAGRLIIKS ILPDFVPENS
WNKVLKKKDI AALVDYVYKQ GGLEITASFL DRLKNLGFEY ATKAGISISI ADIIVPNDKQ
KAIDEAKKQV REIQNSYNLG LITSGERYNK IIDIWKSTNN VLSKEMMKLV EKDKEGFNSI
YMMADSGARG SAAQISQLAA MRGLMTKPDG SIIETPIISN FREGLNVLEY FISTHGARKG
LADTALKTAN AGYLTRKLID VAQNVKITIE DCGTHEGVEI NEITADSSII ETLEERILGR
VLAEDVIDPI TNSVLFAEGT LMDEEKAKIL GESGIKSVNI RTPITCKAKK GICAKCYGIN
LGEGKLVKPG EAVGIISAQS IGEPGTQLTL RTFHSGGTAS TDLQDRQVSA QKEGFIRFYN
LKTYKNKEGK NIVANRRNAA VLLVEPKIKT PFKGVINIEN IHEDVIVSIK DKKQEVKYIL
RKYDLAKPNE LAGVSGSIDG KLYLPYQSGM QVEENESIVE VIKEGWNVPN RIPFASEILV
EDGEPVVQNI KAGEKGTLKF YILKGDGLDR VKNVKKGDIV KEKGFFVVIA DENDREAKRH
YIPRESKIEF NDSEKIDDAN TIIASAPKKE RKVIAEWDAY NNTIIAEIDG VVSFEDIEAG
YSADEQIDEA TGKRSLVINE YLPSGVRPTL VIAGKGDKAV RYHLEPKTVI FVHDGDKIAQ
ADILAKTPKA AAKSKDITGG LPRVSELFEA RKPKNAAVIA EIDGVVRFDK PLRSKERIII
QAEDGTSAEY LIDKSKHIQV RDGEFIHAGE KLTDGVVSSH DVLKILGEKA LHYYLISEIQ
QVYRGQGVVI SDKHIEVIVS QMLRQVKVVD SGHTKFIEGD LVSRRKFREE NERIIRMGGE
PAIAEPVLLG VTRAAIGSDS VISAASFQET TKVLTEASIA GKFDYLEDLK ENVILGRMIP
VGTGLYGEQN LKLKEQE
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