| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_5049 |
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| Symbol | trmE |
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| ID | 3518638 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Colwellia psychrerythraea 34H |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003910 |
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| Strand | - |
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| Start bp | 5368718 |
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| End bp | 5370133 |
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| Gene Length | 1416 bp |
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| Protein Length | 471 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 637287488 |
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| Product | tRNA modification GTPase TrmE |
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| Protein accession | YP_271687 |
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| Protein GI | 71277760 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0486] Predicted GTPase |
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| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00450] tRNA modification GTPase TrmE |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.0840037 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGACATCAA TTTCTCAAAC AACGACAATC GCCGCACAAG CAACCGCACC CGGACGTGGT
GGCGTCGGTA TAATTAGAGT ATCAGGCCCA GAGGCTAAAA ATGTTGCTCA AGCTATTTTA
GGTAAGCTAC CTGAAGTAAG AAAAGCTGAA TATTTACCCT TTTTAGATTG CACATCAACT
GATAAAACAC AGGTATTAGA CCAGGGAATA GCACTCTATT TCAAAGCGCC TAATTCATTT
ACCGGTGAAG ATGTTATCGA ATTTCAAGGC CATGGTGGTC CCGTAATTTT GGATATGCTA
CTCAAAGTAA TTCTTGCGCA ACCCAAAGTT ATCATGGCCA AACCTGGTGA GTTCAGTGAA
CAGGCCTTTT TGAATGACAA ACTCGATTTA ACCCAAGCAG AAGCAATTGC CGATTTAATT
AACTCAAGTT CAGAACAAGC AGCTCGCTCT GCCCTGCACT CTTTACAAGG TGACTTCTCT
AAACTTGTCA ATGAAATGGT AGAAAGTATT ATTCACCTAC GCATGTATGT TGAAGCTGCG
ATTGATTTTC CTGAAGAAGA AATTGACTTT CTTGCTGATA AAAAAATTGT TACTGATTTA
AAAGCTATTA TCAGCCGAGT AGAAGACGTT CGTAAGCAAG CCCAGCAAGG TAGTATTATT
CGTGAAGGAA TGCGTGTAGT GATTGCTGGT CGTCCTAATG CTGGCAAATC TAGCTTACTC
AATGCATTAA GTGGTAAACA AACAGCCATA GTTACCGATA TCGCTGGCAC TACTCGTGAT
GTACTAGCCG AACAAATTCA TATTGATGGC ATGCCGTTAC ACATTATTGA TACCGCTGGA
TTACGAGATA GTGATGATGT TGTTGAGAAA ATAGGCATTG AGCGTGCTTG GCAAGAGATC
AATCAAGCCG ATCGCGTTTT ATTAATGGTT GATGCCAGTG AAGATCACAG TATTTTAGAA
GACGATCAAG ACATTAAAGA TTTCTATCCC GAGTTTTTTG CCAAACTTCC AGAAAAAATT
GGCCTTACAT TAATTAGAAA TAAAGCCGAT GTTAATGATG CTAAAACGGG GTTCACTGAG
TTTACCGATA CCGATGGTAC ACAGCATGCC ATTATTACTT TGTCAGCTAA AACAGGCAAA
GGCGTTGATA GCTTAAAAGA ACACTTAAAA ACAATAATGG GCTACCAAGG TGGCACTGAA
GGGGGCTTTA TGGCGAGAAG ACGTCATTTA GTGGCCTTAG AGAATACGCA TCAGCATTTA
CTTACAGGAT TAGATCAACT TGAATCTTAT GTCGCTGGTG AAATATTGGC AGAAGAGCTG
CGTATTTGTC AGCAAGAATT AGATCAAATC ACCGGGGAAT TCACCAGTGA TGACTTGTTA
GGTAAAATTT TTAGCTCTTT TTGTATTGGA AAATAG
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| Protein sequence | MTSISQTTTI AAQATAPGRG GVGIIRVSGP EAKNVAQAIL GKLPEVRKAE YLPFLDCTST
DKTQVLDQGI ALYFKAPNSF TGEDVIEFQG HGGPVILDML LKVILAQPKV IMAKPGEFSE
QAFLNDKLDL TQAEAIADLI NSSSEQAARS ALHSLQGDFS KLVNEMVESI IHLRMYVEAA
IDFPEEEIDF LADKKIVTDL KAIISRVEDV RKQAQQGSII REGMRVVIAG RPNAGKSSLL
NALSGKQTAI VTDIAGTTRD VLAEQIHIDG MPLHIIDTAG LRDSDDVVEK IGIERAWQEI
NQADRVLLMV DASEDHSILE DDQDIKDFYP EFFAKLPEKI GLTLIRNKAD VNDAKTGFTE
FTDTDGTQHA IITLSAKTGK GVDSLKEHLK TIMGYQGGTE GGFMARRRHL VALENTHQHL
LTGLDQLESY VAGEILAEEL RICQQELDQI TGEFTSDDLL GKIFSSFCIG K
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