| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_5012 |
|---|
| Symbol | |
|---|
| ID | 3522375 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Colwellia psychrerythraea 34H |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003910 |
|---|
| Strand | - |
|---|
| Start bp | 5328604 |
|---|
| End bp | 5330103 |
|---|
| Gene Length | 1500 bp |
|---|
| Protein Length | 499 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 35% |
|---|
| IMG OID | 637287451 |
|---|
| Product | putative polysaccharide biosynthesis protein |
|---|
| Protein accession | YP_271651 |
|---|
| Protein GI | 71281903 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2244] Membrane protein involved in the export of O-antigen and teichoic acid |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAAC AATTAATTAA AAGTTCAACG TTTAGAACAT TAGAAGTTAT TATTATTACC
GTAATATCGC TAGTGTTAAC ACCCTATCTT ATTCATCATC TAGGTGATGC CCACTACGGG
CTATGGATTC TAATTCTTTC AGCATTAGGT TGGTTTAATT TTATAGATCT TGGCTTTGCT
TATGCAGTAC AAAGAAACAT CGTATTAGCA CTGGAAAATA AAGACAACCA CCGTATAAAT
ATAGTTTTTT CAGTTGCTGT AGCCTTATTT TCTGTTTTGG GCTTTATTGC TGCTTTTTGT
GTTTTGGTGC TTGCCTTTTT TCCTGAGTTA CTCGGAATAA ATGAAAAAGA ACAGTCAATT
GCAACAATAG CTTTTTCGAT ATTAGCGATT AAAGTTTTTT TAGATTTTAT CATGAATTGT
TTTCACGGTT TCTTCACTGC GTATCTTCGC ATGGATATTG ATGCGAACCT CGGTACTCTT
AATATGGTGG TAAAATCAAT ACTGGTATTT TACCTAATTA TTGATATGAA TATTTATGGG
GCAGTGTTTG CCACAATTGC TGCAGATATA CTGACACACA GCTTAAAAAT GCATTTTGCC
CGTAAACTTC ATCCGGAATT CAAGTTTGTT CTCCACTTGG TTAAGTTTAG CGAAGTTAGG
CAATTATTCG CATTCTCCAA ACATCTTATT TTGATGGGAA TGGCAAAGAG TGTTAATCGA
CGAGTAGATC CCATTATTAT TAGTCATTTA TTAGGTTTGA AATTTGTCGC TATTTACAAT
GTAATTAATA GTTTGATGAA TCAAGTTGAA TCACTAGTTG GAGCTATCGT TGGTGTTTTT
CAACCAGTAC TTACCAAAAT GGTTGCTAGA AATACAGGGC TGGATGGGAC ATTCAAACTG
ATCATCAGTA TTAATTTTTT TACCGTCATT TTACTGTATA TGCCATTGGC TATTTTAGCC
GAAGATTTTA TCACGTTATG GATAGGCCTT GATTATGCTC AAGCAGGGCA ACTAGCTCCA
ATACTCGGGT TTGCTTATAT TTGTCGAACG GTTTCTCGCC CGATCAGTAG TTTATTGTTA
GCAAAAGCTC AACACCAGTT GTTGTCGGTT GTTAATTTGC TTGGGGCTTT ATTAAACATC
GGTTTATCGT TAGTGTTAGG TAGTCAGTGG GGATTATTGG GGATAGCCAT TGCGACTGCA
TGTAGTTTTT TTGTATCTGA TGTTATTTTG CATTTAGTCT TATTAAATAA ATATACAGAA
TTACCAGTTT TAAAACCAAT CTTGGAATTC ATCAAACTTG TGGTTTTATA CATTTTGCTT
GTTGTCTTGG GTATAAGTAT GATGCAATTA TTTGAACCTC TTAATTGGGG GCAGCTAATT
ATTGCAGCGA TTGCTTGTGT TTGTATAGCG TTGCTTATTG CATGGCCTAT GCTGCTAGAT
AAAGAGGTTA AACAGAAGTT GCTTGGTATG CTAATAAAAA CAGGAAAAGC TCATGACTAG
|
|---|
| Protein sequence | MKKQLIKSST FRTLEVIIIT VISLVLTPYL IHHLGDAHYG LWILILSALG WFNFIDLGFA
YAVQRNIVLA LENKDNHRIN IVFSVAVALF SVLGFIAAFC VLVLAFFPEL LGINEKEQSI
ATIAFSILAI KVFLDFIMNC FHGFFTAYLR MDIDANLGTL NMVVKSILVF YLIIDMNIYG
AVFATIAADI LTHSLKMHFA RKLHPEFKFV LHLVKFSEVR QLFAFSKHLI LMGMAKSVNR
RVDPIIISHL LGLKFVAIYN VINSLMNQVE SLVGAIVGVF QPVLTKMVAR NTGLDGTFKL
IISINFFTVI LLYMPLAILA EDFITLWIGL DYAQAGQLAP ILGFAYICRT VSRPISSLLL
AKAQHQLLSV VNLLGALLNI GLSLVLGSQW GLLGIAIATA CSFFVSDVIL HLVLLNKYTE
LPVLKPILEF IKLVVLYILL VVLGISMMQL FEPLNWGQLI IAAIACVCIA LLIAWPMLLD
KEVKQKLLGM LIKTGKAHD
|
|---|
| |